Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00112 ATGTCCAACAATAATAATCGACTCGCTTTCACCAAAGATTTCTTCTCCTCTCCCGCTCTTTCTCTTACTCTCGCGGGGATTTTTCGCCGGGGTGAGATGGCGGAGAAGGGCGATGTTGAGATGGAGGAGGTTGACGATGGCAGCGGAGAAGTGCGGCGGGATGATGCGGCGGAGGTTAGTAGCGAGAATTTGGGACCGGTGAGATCGAGATCGGACGACGATTTCGAGGGCGGAGGAGTGCATGAGGAAAATGAAGAGGGGGATGGTGGATGTCTTGTAAAGAGAAGGAAGAAATATCATCGGCATACCACCGAGCAGATCAGAGAAATGGAGGCGCTATTTAAAGAGTCGCCTCACCCAGATGAGAAGCAAAGGCAGCAGCTTAGCAAGAGATTAGGGCTTTCACCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGCCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAACTTACCAAGAAAAAAGTTGGCTGTCCAAATTGTGGCACTGCCAACGCTGCTGAAGACCATACCGCCTTCACAACTACGGAGCAATTGCGTATTAAGAATGCTAAGCTCAAAGCCGAGGTCGAAAAATTACGAGCAGCACTCGGAAAACACTCGCAATCATCGATCTCACCTTCATATTCGTCCGGGAACGACCAAGAGGCAAACCGAAACTGCTTAGATTTTTACACTGGAATTTTCGGCCTCGAAAAGTCGAGGATCATGGAGAGAGTTCATCAAGCTCTCGAAGAGCTCAAAACAATGGCTGTCACAAACGAGCCACTTTGGATCCGTAGTATCGAGACAGGACGAGAGATTTTAAACTACGACGAGTACTTGAAAACGTTCCATGTCAAGAATTCGAACGCTTGTTGGCTCAAAAGACATATCGAAGCCTCTCGAGACACGACCGTCGTCTTCATGGAGCCCTCGAGGTTGATCCAAAGCTTCATGGACGAGAATCAATGGAAGGAGATGTTTCCTTCCATGATCTCAAAGGCAGCTACAATTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATGGCGCAGTGCAATTGATGTTTGTGGAGGTGCAGCTGCTTACACCATTGGTGCCCACAAGAGAAATCTATTTTATACGTCATTGCAAGCAGCTCGACGCTGAACTATGGGCGATTGTCGATGTTTCGATCGACAACGTTGACGATACTAATATCGATGCTTCGTTGATGAAGTATAGAAAACGTCCTTCTGGTTGCATCATTAAAGATGAATCTAATGGCCATTGCAAGGTAACGATGGTGGAGCATTTGGAATGTGAAAAAACCAAAGTTCATAACTTGTACCGCACCATAGTCAACAATGGCACTGCCTTTGGAGCAAGACATTGGATGGCAACGCTTCAACTCCAATGCGAACGCCTTGCTTTCTTTATGGCCACCAACATCCCCATCAAAGACTCAACTGGAGTTGCAACTCTGGCGGGAAGAAAAAGCATTTTGAAGTTGGCAGAGAGAATGAGTTCAAGCTTCTCCCAAGCAGTGGCAGCTTCAAGTTACCAAACATGGACCAAAGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCCAGGAAAAATCTAAGTGACCCTGGTGAACCCATTGGTGTTATTTTATGTGCAGTTTTTTCTCTATGGCTGCCTGTTCCTCCCCACACTCTCTTCCATTTCTTGCGAGACGAAGCTCGAAGGAACGAGTGGGACGCCATGTTTGGTGGAGATAAAGTTGAGTCAATTGCAAATTTGGCTAAAGGGCAGGATCGAGGCAACTCAGTTAGTATTCAAACAAGAGGATCAAAAGAGAGCAGCAGCATGTGGATTCTCCAAGACGCCTCCACAAACTCCTCGGAATCCATGGTAGTCTACTCCGGAGTAGACGTTTCCGGCATGCAGTCGGTGATGACAGGCTGTGATTCCGGCAGCCTCACAATCCTCCCATCGGGCTTTTCAATTCTCCCCGACGGCGCTGAGTCCAGGTCCCTCCTCATCACTCGCCAGAAGGACCACAAATCTTCGGATACCCATGGTGGCGCTCTGCTGACCGCCGCCGTCCAAATTGTGACCGACGCCTCTCCCTCTGCAAAACCCACGGTGGATTCGGTTGACCTCCACCTCCTATCTCAACCTGGCAACTCCAAGTTCCTTCCTTTTCCAACCAAGAAGGCAACAATGGCTTCCTTAACAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGGACCAAGCTGCCCCTCAGGCCCTCTCGCCAGACCTTGACGCCCAAGAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGTTTACTTTGATTTAGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTCGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTTCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTTGGGCCGCGTGGCAAGATCTAA 2697 48.2 MSNNNNRLAFTKDFFSSPALSLTLAGIFRRGEMAEKGDVEMEEVDDGSGEVRRDDAAEVSSENLGPVRSRSDDDFEGGGVHEENEEGDGGCLVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMRELTKKKVGCPNCGTANAAEDHTAFTTTEQLRIKNAKLKAEVEKLRAALGKHSQSSISPSYSSGNDQEANRNCLDFYTGIFGLEKSRIMERVHQALEELKTMAVTNEPLWIRSIETGREILNYDEYLKTFHVKNSNACWLKRHIEASRDTTVVFMEPSRLIQSFMDENQWKEMFPSMISKAATIDVICNGEVANWNGAVQLMFVEVQLLTPLVPTREIYFIRHCKQLDAELWAIVDVSIDNVDDTNIDASLMKYRKRPSGCIIKDESNGHCKVTMVEHLECEKTKVHNLYRTIVNNGTAFGARHWMATLQLQCERLAFFMATNIPIKDSTGVATLAGRKSILKLAERMSSSFSQAVAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVFSLWLPVPPHTLFHFLRDEARRNEWDAMFGGDKVESIANLAKGQDRGNSVSIQTRGSKESSSMWILQDASTNSSESMVVYSGVDVSGMQSVMTGCDSGSLTILPSGFSILPDGAESRSLLITRQKDHKSSDTHGGALLTAAVQIVTDASPSAKPTVDSVDLHLLSQPGNSKFLPFPTKKATMASLTTLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 496938 503239 + CmoCh01G001120.1 Cmo01g00112 373595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00112 898 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Cmo01g00112 898 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 13 733 - -
Cmo01g00112 898 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Cmo01g00112 898 Pfam START domain 270 491 IPR002913 GO:0008289
Cmo01g00112 898 MobiDBLite consensus disorder prediction 36 89 - -
Cmo01g00112 898 Gene3D - 852 874 - -
Cmo01g00112 898 ProSiteProfiles START domain profile. 257 494 IPR002913 GO:0008289
Cmo01g00112 898 SUPERFAMILY Bet v1-like 259 492 - -
Cmo01g00112 898 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 733 IPR042160 -
Cmo01g00112 898 SUPERFAMILY Bet v1-like 513 688 - -
Cmo01g00112 898 SUPERFAMILY Homeodomain-like 86 154 IPR009057 -
Cmo01g00112 898 Pfam Photosystem I reaction centre subunit VI 761 898 IPR004928 GO:0009522|GO:0009538|GO:0015979
Cmo01g00112 898 CDD START_ArGLABRA2_like 261 490 - -
Cmo01g00112 898 SMART START_1 266 491 IPR002913 GO:0008289
Cmo01g00112 898 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Cmo01g00112 898 Coils Coil 152 182 - -
Cmo01g00112 898 SMART HOX_1 95 157 IPR001356 GO:0003677
Cmo01g00112 898 Gene3D - 84 167 - -
Cmo01g00112 898 MobiDBLite consensus disorder prediction 67 89 - -
Cmo01g00112 898 CDD homeodomain 96 151 IPR001356 GO:0003677
Cmo01g00112 898 Coils Coil 204 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00112 Cmo-Chr1:496938 Cmo08g00893 Cmo-Chr8:5801325 0 dispersed
Cmo14g01340 Cmo-Chr14:11159583 Cmo01g00112 Cmo-Chr1:496938 2.83E-143 transposed
Cmo01g00112 Cmo-Chr1:496938 Cmo14g01339 Cmo-Chr14:11154592 0 wgd
Cmo01g00112 Cmo-Chr1:496938 Cmo08g00673 Cmo-Chr8:4319205 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9001 PF01852 START 5.40E-50 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00112 K09338 - csv:101221341 1174.46