Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00116 ATGGATTTCTGGCCGGAATTTCTCGCTAGCAGTTGGGGAAAAGAGTTCGTCGGCGGCGGAATCGGCGGCGTTGCAGGCGTCGTCTCCGGCTACCCACTCGACACCCTCCGCATTCGTCAACAACACTCCACCTCCGGTTCCGCCCTCAGCGTCCTCCGCAACATCGTGTCCAACGGCGGCCCCACCGCTCTCTTTCGAGGAATGGGTGCTCCACTCGCTTCCGTCACTTTCCAGAACGCCGTTGTTTTCCAGACAAACGCCGTGCTCTGCAGTGTGATCGATCCGGCGGCGAGTCAAACCCGTCCGCCGTCGTACAAGGCGGTGGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTAATTTTAACACCCGTAGAGCTCGTCAAAATCCGTCTTCAATTACAGGATTTGGGAAATTCAAGCCACTCAGACGTGGGTTCGTCTCGGCCCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAGAGGGCTATACAGAGGCTTAACGATCACGATGCTCAGAGACGCTCCTTCGCACTGTTTCTACTTCTGGACTTACCAATTCATGAGAGAAAAGCTTCATCCCGGCTGCAGAAACACCGGACAAGAGTCCTTGAGAACGATGATCGTCGCCGGCGGACTCGCCGGCGTCGCCAGTTGGGTTTGCTGTTACCCACTCGACGTTGTGAAAACCAGACTTCAAGCTCAGTCAAAAATTTCGTTTCAAAAGTACAATGGAATCATGGATTGTTTCTACAAGAGCGTCAAGGAAGAAGGGTACAGTGTTTTGTGGCGTGGATTGGGAACTGCCATTGCCAGAGCTTTTGTGGTTAATGGCGCCGTTTTCTCTGCTTATGAGCTCAGTTTGAGGTGTCTGTTCAGCAATGGCGGATTGCATGCTGATCATACGATTTGA 930 53.33 MDFWPEFLASSWGKEFVGGGIGGVAGVVSGYPLDTLRIRQQHSTSGSALSVLRNIVSNGGPTALFRGMGAPLASVTFQNAVVFQTNAVLCSVIDPAASQTRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGNSSHSDVGSSRPGPMQVAKNIFKTEGYRGLYRGLTITMLRDAPSHCFYFWTYQFMREKLHPGCRNTGQESLRTMIVAGGLAGVASWVCCYPLDVVKTRLQAQSKISFQKYNGIMDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAVFSAYELSLRCLFSNGGLHADHTI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 510705 512242 - CmoCh01G001160.1 Cmo01g00116 373599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00116 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 299 - -
Cmo01g00116 309 Pfam Mitochondrial carrier protein 212 299 IPR018108 -
Cmo01g00116 309 Pfam Mitochondrial carrier protein 11 88 IPR018108 -
Cmo01g00116 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Cmo01g00116 309 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 299 - -
Cmo01g00116 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085
Cmo01g00116 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Cmo01g00116 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Cmo01g00116 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085
Cmo01g00116 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Cmo01g00116 309 Gene3D Mitochondrial carrier domain 12 301 IPR023395 -
Cmo01g00116 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Cmo01g00116 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Cmo01g00116 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00116 Cmo17g00772 CCT
Cmo01g00116 Cmo08g00656 CCT
Cmo01g00116 Cmo14g01344 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00116 Cmo-Chr1:510705 Cmo16g01204 Cmo-Chr16:8616424 3.59E-50 dispersed
Cmo01g00116 Cmo-Chr1:510705 Cmo14g01344 Cmo-Chr14:11179878 0 wgd
Cmo01g00116 Cmo-Chr1:510705 Cmo17g00772 Cmo-Chr17:7488183 3.78E-142 wgd
Cmo01g00116 Cmo-Chr1:510705 Cmo08g00656 Cmo-Chr8:4258204 8.98E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00116 K15109 - csv:101222749 559.296