Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00146 ATGGCGCACATTCTGCTTCATGGCACCCTTCATGTCACCATTTATGAGGTGGATAAGCTTCACTCCGGTGCTCGCAATTTCTTGAAATCGTTGGTTGAAAACGTAGAGGAAGCTGTGGGGTTTGGCAGAGGAGTAACGAGGCTGTACGCCACCATTGATTTAGAGAAGGCCAGAGTTGGAAGAACAAGAAGACTCGAGAAAGAACATTCAAATCCAAAATGGTACGAAACTTTCCACATCTACTGTGCTCACATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAATCCCATTGGAGCAACCTTAATCGGCAGAGCATATTTGCCTGTCAAAGAGATCATAAGCGGTGAAGAAGTTGACCAATGGGTTCCTATCTTGGACGAACGCAAGAAGCCGATTCGTGGAGACCCCAAAATTCATGTCAAATTACAATACTTCGATGTCACTAAGGATCAAAACTGGGGTCGTGGCATCAAAAGCTCCAAGTTTCCTGGAGTTCCCTACACTTATTTCTCTCAACGACAAGGTTGTAAGGTAACTTTGTACCAAGATGCTCATGTTCCTGACAACTTCATCCCCAAAATTCCTCTTGCTGGTGGCAAGTTTTATGAGCCAAATAGATGTTGGGAAGATATTTTTGATGCAATTATTAATGCTAAACACATGATTTACATTACTGGTTGGTCTGTTTACACTGAGATTTCTCTGGTGAGAGATAAAAGAAGGCCAAAGCCTGGTGGAGATATGATGCTTGGTGAATTGCTTAAGAAAAAAGCAAATGAAGGAGTTAGAGTTCTTTTGCTTGTTTGGAATGATACTACTTCTGTGCCTATCCTGAAGGAGGACGGGCTAATGGCTACTCATGATGAAGATACTGCTAAGTTCTTTGCTAATACTGATGTGCATTGTGTTCTGTGTCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAGGATATTGCCGTTGGGACAATGTTTACTCATCATCAAAAGATTGTTGTTGTGGACAGTGCTTTGCCTAATGGAGATCCAAATCGAAGGAGGATTGTTAGTTTTGTTGGTGGGATTGATCTTTGTGATGGTAGATATGATACTCCATTTCATTCCCTTTTCAGGACTTTGGATTCAGCCCATCATGACGATTTCCATCAGCCAAACTTCACCGGTACTTCCATAAACAAAGGTGGTCCGAGAGAGCCATGGCACGATATCCATTCCCGCCTTGAAGGACCGGTTGCGTGGGATGTTTTGTACAACTTTGAGCAGAGGTGGAGGAAGCAAGGTGGAAAAGATTTGCTTGTGAAATTAAGGGAGTTGGATGCCATCTTCATCCCTCCATCACCTATCATGTTCCCTGATGACTTTGATAGTTGGAATGCTCAAGTTTTCAGGTCCATCGATGGCGGGGCGGCTTTTGGCTTCCCCGACTCGCCCGAAGAAGCAGCCAAAGCTGGACTTATAAGTGGAAAGGACAATATTATTGATAGAAGCATCCAAGATGCTTACATTAATGCCATTAGAAGAGCAAAGAATTTCATATACATTGAAAATCAGTATTTCCTTGGAAGCTCGTTTGAATGGAGAGGTACTGATGTGAAGCCGGAGATGATCAATGCCCTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCTCGAGAGCGGTTCACTGTGTACGTCGTCGTCCCGATGTGGCCGGAAGGATTCCCAGAGGGGGGAACAGTTCAAGCTATATTAGATTGGCAAAGAAGAACAATGGAGATGATGTATAAAGATATAGCTCTAGCCCTTAGAGTTAATGGCATCGAAGAGGATCCTAGAAACTATCTGACTTTCTTTTGTGTAGGCAATCGCGAAGTTAAGAAGCCTGGAGAATATGAGCCATCAGAATCCCCTGATGAAAATTCCAGTTACCTTAGAGCCCAACAAGCCAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATCGTTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCCATGGGAGCTTACCAGCCATTTCATCTGTCATCAAGAGAGCCAGCAAGAGGCCAAGTCCATGGCTTCCGCATGGCATTATGGTTTGAACATTTAGGATTACTCCATGACTCCTTCCTCTTTCCAGAAAGCATCGAGTGTGTAAGAAAAGTTAACCAACTTGCTGATAAATATTGGGACCTATACTCAAGTGAAACCTTTGAACACGACCTTCCCGGCCACCTGCTTCGCTACCCGATCAGCATCTCCGGTGACGGTGAAATTACCGAGCTTCCCGGGTTCGAGTTCTTCCCGGATACTAAGGCGCGAGTCCTAGGTAACAAGTCTAATTATCTCCCTCCGATCCTCACTACTTAA 2424 43.98 MAHILLHGTLHVTIYEVDKLHSGARNFLKSLVENVEEAVGFGRGVTRLYATIDLEKARVGRTRRLEKEHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVKEIISGEEVDQWVPILDERKKPIRGDPKIHVKLQYFDVTKDQNWGRGIKSSKFPGVPYTYFSQRQGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPNRCWEDIFDAIINAKHMIYITGWSVYTEISLVRDKRRPKPGGDMMLGELLKKKANEGVRVLLLVWNDTTSVPILKEDGLMATHDEDTAKFFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPNGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFTGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLVKLRELDAIFIPPSPIMFPDDFDSWNAQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGTDVKPEMINALHLIPKELSLKIVSKIEARERFTVYVVVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIALALRVNGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPDENSSYLRAQQARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPFHLSSREPARGQVHGFRMALWFEHLGLLHDSFLFPESIECVRKVNQLADKYWDLYSSETFEHDLPGHLLRYPISISGDGEITELPGFEFFPDTKARVLGNKSNYLPPILTT 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 632664 637001 + CmoCh01G001460.1 Cmo01g00146 373629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00146 807 PANTHER PHOSPHOLIPASE D 2 807 IPR015679 -
Cmo01g00146 807 PANTHER PHOSPHOLIPASE D 2 807 - -
Cmo01g00146 807 SUPERFAMILY Phospholipase D/nuclease 150 435 - -
Cmo01g00146 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cmo01g00146 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Cmo01g00146 807 SMART pld_4 325 363 IPR001736 GO:0003824
Cmo01g00146 807 SMART pld_4 653 680 IPR001736 GO:0003824
Cmo01g00146 807 Gene3D Endonuclease Chain A 200 440 - -
Cmo01g00146 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Cmo01g00146 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Cmo01g00146 807 SUPERFAMILY Phospholipase D/nuclease 497 737 - -
Cmo01g00146 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Cmo01g00146 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Cmo01g00146 807 CDD C2_plant_PLD 2 147 - -
Cmo01g00146 807 Gene3D Endonuclease Chain A 479 697 - -
Cmo01g00146 807 SMART C2_3c 9 123 IPR000008 -
Cmo01g00146 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Cmo01g00146 807 Pfam C2 domain 8 126 IPR000008 -
Cmo01g00146 807 Gene3D C2 domain 6 157 IPR035892 -
Cmo01g00146 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00146 Cmo-Chr1:632664 Cmo08g00643 Cmo-Chr8:4179383 0 dispersed
Cmo01g00146 Cmo-Chr1:632664 Cmo05g00331 Cmo-Chr5:1463539 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00146 K01115 - csv:101215246 1571.99