Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00160 ATGGCGGCCTTAATTCAAATCTCCCATCTCCTACTTTTCATCCTTCTCTACTATCCTTCCCTCTCTGCTTCCTTCACCGTCATTATGTCTGACTCCGGCGCTCCCTCTGCCCTTGTCGACGGCCCTCAATCCGGCTTCTCCCTCCATAACGCCGCCGTCCGTACCGACCCCGCCGAACAATCCGCCGTCTATGATATCATGTCCGCCACCGGCAATCCCTGGGCCACCCAAATCCCCGACGTCTGCGGCGGCCGCTGGCACGGCATTGAATGTATGCCTGATAATCACAATCTCTTCCATGTTGTTTCTCTCTCTTTCGGGTCGCTCTCCGACGATACCGCATTTCCGACCTGCGACCCGACCCGATCCACTATTTCTCCTTCTCTCGCTAAACTCCCCCATCTTCGGACACTGTTCTTCTACCGTTGTTTTACTGATAATCCGCAAATTGTCCCTTCGTTTTTGGGCCAGTTGGGCCCTTCCTTGCAGACTTTGGTCCTACGAGAGAATGGGCTTATTGGCCCAATTCCCAGTGAATTGACTAATTTGACCCGGCTCAAGGTTTTGGATCTTCATGGGAATAACCTAAACGGGTCGATTCCGGTTGGCTTGAACCGTTTGGTCGGTCTGCGGTCGTTGGATTTGAGTTGGAATAAGTTGACTGGTTCGATCCCGAGTTTGGCGTTGGATAATTTGAGAATACTCGATTTGAGTCAAAATCTTTTGACTGGTTGGATTCCAAATAGGATTGTGACATGTCAGTCTCTGATTAAATTGGATTTAAGTCGTAATAGCTTGATGGGAGTAATCCCAGAATCCATTACCAAGCTTAAGGATCTCGTACTTTTGGATTTGAGTTATAATCAAATCTCGTGTCCACTTCCAGTGTCGCTTCAGCATTTGAGCTCGTTAGAGGTTTTGATCTTGAAAGGAAACCCAATGGGTTGTACCATTTCTAATGATCTATTCGACGGCATGTTGAGCTTGATGACGTTGATTCTTTCTAATATGGGCTTTCACGGACCAATTCCTAGGTCTTTGGGTCGATTGCCCAATCTTCGAGTCCTACATCTTGATGCCAACTACTTTAACGGTTCAATCCCCTCAAACTTTCAAGATTTGAGAAACCTCAACGTTCTAAGACTCAACGATAACATGTTAACCGGACGAATCCCACTGCAGAAACAAACGATATGGAAGATGAAGAGGAAGCTTACATTATACAATAACTCAAACTTGTGTTACGACTCTGAGACCGGAGTTGTCGACATGTCAGCCTCACCATATAGTGTCGGTATCGGTCCATTGCAAGTGGGTGTGATTTGGCTCCGTGTTCATGGCCTTTCGCGCGATGTTTTGCTGTGGAATTGGTTCTGCACGGTACGTTTAATACTTGAAACTCTGTGTTCATTTACTTCATCAAGTTATTTGTTTTCTGGAAATCTGATGTGTATTGTATTGGGTTGGAATTTGGGGCTCGGGAAAGGAAGAGGGAAGAAACATCAAACATGGAGGGTCTTTTCATTGAAGGAGTTGCACTCGGCCACAAATAATTTCAATTATGATAACAAGCTTGGAGAAGGAGAATTTGGTAGCGTTTACTGGGGTCAGCTTTGGGATGGATCACAAATTGCAGTTAAGAGGTTGAAGGTTTGGAGCAACAAAGAAGACATGGAATTCTCTGTTGAAGTCGAGATACTGGCCCGAGTTCGGCATAAGAATCTATTGAGTTTACGTGGCTATTGTGTTGAAGGGCAAGAGCGTTTGATCGTGTACGACTACATGCCCAATCTAAGTCTTCTCTCCCATCTACATGGGCATCACTCTTCAGAATCCCAACTCGATTGGAAACGTCGTATGAAAATCGCTATCGGGTCTGCCGAGGGAATTGCCTATCTTCACCACCAAGCAACTCCACGTATAATTCATCAAGACATCAAACCAAATAACGTTTTGCTCGATCCAGACTTCCAAGCTCGTGTAGTCGACTTCGGGTTCGCAAAACTCATCCCCGATGATGCAACACATGTAACAACAGGAGTCAAGGGCACACTCGGATACCTCGCTCCAGAATACGGTATGTCAGGGAAGGCATCAGAGAGTTGTGATGTATATAGCTTCGGCATTCTCCTGCTCGAACTCGCAACCGGAAAGAAACCTCTTGAGAAGTTGAGTGCAACAACGAAACGCACAATCACAGAGTGGGCACTGCCAGTAGTAGTTGAGAAAAAATACAACGAACTTGCAGATCCAAAGCTAAATGGAGAGTACAATGCAGACGAGCTAAAGCGAGTCGTCCTCGTTGCACTCAGTTGCTCCCATTCACGGCCTGAGAAACGTCCCACCATGCTCGACGTCGTAGAGCTCCTAAAAGGAGAATCAAAAGAGAAGGTAGCCAAGTTAGAAGATGATGAACTGTTCAAGAGCCATCAAGTAGGTGCAGCACAAACTACAGAAACAGCAGCAGCTGGTGAAGATAGCTCAGACTTGATTTCAGAAGAAAAGGATTCAAAAGAGAATTCAACACCAAACCCACATGAGAATAGCAGCTAA 2553 46.06 MAALIQISHLLLFILLYYPSLSASFTVIMSDSGAPSALVDGPQSGFSLHNAAVRTDPAEQSAVYDIMSATGNPWATQIPDVCGGRWHGIECMPDNHNLFHVVSLSFGSLSDDTAFPTCDPTRSTISPSLAKLPHLRTLFFYRCFTDNPQIVPSFLGQLGPSLQTLVLRENGLIGPIPSELTNLTRLKVLDLHGNNLNGSIPVGLNRLVGLRSLDLSWNKLTGSIPSLALDNLRILDLSQNLLTGWIPNRIVTCQSLIKLDLSRNSLMGVIPESITKLKDLVLLDLSYNQISCPLPVSLQHLSSLEVLILKGNPMGCTISNDLFDGMLSLMTLILSNMGFHGPIPRSLGRLPNLRVLHLDANYFNGSIPSNFQDLRNLNVLRLNDNMLTGRIPLQKQTIWKMKRKLTLYNNSNLCYDSETGVVDMSASPYSVGIGPLQVGVIWLRVHGLSRDVLLWNWFCTVRLILETLCSFTSSSYLFSGNLMCIVLGWNLGLGKGRGKKHQTWRVFSLKELHSATNNFNYDNKLGEGEFGSVYWGQLWDGSQIAVKRLKVWSNKEDMEFSVEVEILARVRHKNLLSLRGYCVEGQERLIVYDYMPNLSLLSHLHGHHSSESQLDWKRRMKIAIGSAEGIAYLHHQATPRIIHQDIKPNNVLLDPDFQARVVDFGFAKLIPDDATHVTTGVKGTLGYLAPEYGMSGKASESCDVYSFGILLLELATGKKPLEKLSATTKRTITEWALPVVVEKKYNELADPKLNGEYNADELKRVVLVALSCSHSRPEKRPTMLDVVELLKGESKEKVAKLEDDELFKSHQVGAAQTTETAAAGEDSSDLISEEKDSKENSTPNPHENSS 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 691507 696833 + CmoCh01G001600.1 Cmo01g00160 373643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00160 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Cmo01g00160 850 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 33 392 - -
Cmo01g00160 850 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 151 792 - -
Cmo01g00160 850 Pfam Leucine rich repeat 255 313 IPR001611 GO:0005515
Cmo01g00160 850 Pfam Leucine rich repeat 160 220 IPR001611 GO:0005515
Cmo01g00160 850 Gene3D Ribonuclease Inhibitor 320 420 IPR032675 -
Cmo01g00160 850 Gene3D Ribonuclease Inhibitor 59 227 IPR032675 -
Cmo01g00160 850 Gene3D Ribonuclease Inhibitor 228 319 IPR032675 -
Cmo01g00160 850 Pfam Protein kinase domain 520 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00160 850 SMART serkin_6 519 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00160 850 MobiDBLite consensus disorder prediction 811 825 - -
Cmo01g00160 850 SMART LRR_typ_2 277 300 IPR003591 -
Cmo01g00160 850 SMART LRR_typ_2 229 253 IPR003591 -
Cmo01g00160 850 SMART LRR_typ_2 301 325 IPR003591 -
Cmo01g00160 850 SMART LRR_typ_2 350 373 IPR003591 -
Cmo01g00160 850 SMART LRR_typ_2 183 207 IPR003591 -
Cmo01g00160 850 SUPERFAMILY L domain-like 60 416 - -
Cmo01g00160 850 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Cmo01g00160 850 Gene3D Transferase(Phosphotransferase) domain 1 595 808 - -
Cmo01g00160 850 MobiDBLite consensus disorder prediction 828 842 - -
Cmo01g00160 850 PRINTS Leucine-rich repeat signature 210 223 - -
Cmo01g00160 850 PRINTS Leucine-rich repeat signature 229 242 - -
Cmo01g00160 850 Gene3D Phosphorylase Kinase; domain 1 496 594 - -
Cmo01g00160 850 ProSiteProfiles Protein kinase domain profile. 519 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00160 850 MobiDBLite consensus disorder prediction 810 850 - -
Cmo01g00160 850 CDD STKc_IRAK 525 792 - -
Cmo01g00160 850 SUPERFAMILY Protein kinase-like (PK-like) 502 790 IPR011009 -
Cmo01g00160 850 ProSiteProfiles Leucine-rich repeat profile. 209 231 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00160 Cmo14g01393 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00160 Cmo-Chr1:691507 Cmo16g00169 Cmo-Chr16:769031 1.01E-125 dispersed
Cmo20g00268 Cmo-Chr20:1311500 Cmo01g00160 Cmo-Chr1:691507 1.17E-55 dispersed
Cmo01g00160 Cmo-Chr1:691507 Cmo14g01393 Cmo-Chr14:11465840 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74013 PF00069 Pkinase 6.20E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00160 - - csv:101208033 689.108