Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00179 ATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTGCTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACGCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCGACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCGTCAGCCCACCAATTTCGACGACGGCTATGGTGCCTCCGGCGTTCACTTTCCGGAGACGGACTCCAAGTGGGTCGCCGGCGGTGAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA 579 51.12 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSRRQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNNNNYLNDIESTNN 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 785316 786097 - CmoCh01G001790.1 Cmo01g00179 373662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00179 192 SUPERFAMILY DNA-binding domain 7 56 IPR016177 GO:0003677
Cmo01g00179 192 MobiDBLite consensus disorder prediction 103 128 - -
Cmo01g00179 192 MobiDBLite consensus disorder prediction 106 121 - -
Cmo01g00179 192 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700|GO:0006355
Cmo01g00179 192 CDD AP2 6 55 IPR001471 GO:0003700|GO:0006355
Cmo01g00179 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 178 - -
Cmo01g00179 192 Pfam AP2 domain 7 52 IPR001471 GO:0003700|GO:0006355
Cmo01g00179 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cmo01g00179 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cmo01g00179 192 SMART rav1_2 7 67 IPR001471 GO:0003700|GO:0006355
Cmo01g00179 192 PANTHER ETHYLENE RESPONSE FACTOR 1 178 - -
Cmo01g00179 192 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00179 Cmo-Chr1:785316 Cmo05g00362 Cmo-Chr5:1640781 3.27E-48 dispersed
Cmo01g00179 Cmo-Chr1:785316 Cmo17g00858 Cmo-Chr17:7913388 8.15E-51 wgd
Cmo01g00179 Cmo-Chr1:785316 Cmo08g00588 Cmo-Chr8:3585257 2.91E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9004 PF00847 AP2 3.50E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00179 - - cmos:111452652 387.882