Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00179 | ATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTGCTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACGCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCGACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCGTCAGCCCACCAATTTCGACGACGGCTATGGTGCCTCCGGCGTTCACTTTCCGGAGACGGACTCCAAGTGGGTCGCCGGCGGTGAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA | 579 | 51.12 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSRRQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNNNNYLNDIESTNN | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 785316 | 786097 | - | CmoCh01G001790.1 | Cmo01g00179 | 373662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00179 | 192 | SUPERFAMILY | DNA-binding domain | 7 | 56 | IPR016177 | GO:0003677 | |
Cmo01g00179 | 192 | MobiDBLite | consensus disorder prediction | 103 | 128 | - | - | |
Cmo01g00179 | 192 | MobiDBLite | consensus disorder prediction | 106 | 121 | - | - | |
Cmo01g00179 | 192 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g00179 | 192 | CDD | AP2 | 6 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g00179 | 192 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 178 | - | - | |
Cmo01g00179 | 192 | Pfam | AP2 domain | 7 | 52 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g00179 | 192 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g00179 | 192 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g00179 | 192 | SMART | rav1_2 | 7 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo01g00179 | 192 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 178 | - | - | |
Cmo01g00179 | 192 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00179 | Cmo-Chr1:785316 | Cmo05g00362 | Cmo-Chr5:1640781 | 3.27E-48 | dispersed | |
Cmo01g00179 | Cmo-Chr1:785316 | Cmo17g00858 | Cmo-Chr17:7913388 | 8.15E-51 | wgd | |
Cmo01g00179 | Cmo-Chr1:785316 | Cmo08g00588 | Cmo-Chr8:3585257 | 2.91E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9004 | PF00847 | AP2 | 3.50E-11 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00179 | - | - | cmos:111452652 | 387.882 |