Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00189 ATGCCACTAGCCGCCGCATCAGCCGCCGTAGCTTCCGGCCAAACTGTTTGTGTCACCGGTGCTGGTGGCTTCATTGCCTCGTGGCTCGTGAAGCTCCTTCTCCAAAAGGGTTACAACGTTAGAGGCACTGTCAGAAACCCTGGTTGGTGTCTTGGTGATTCGAAGAATGCTCATTTGAAAGAGCTTGATGGAGCTAAGGAAAGGCTAACGTTGTATGCTGCTGATCTTCTTCATTTTGAGAGCCTTAAAGCCGCCATTATGGGCTGTGACGGTGTTTTCCACGCTGCATCACCCGTAACCGATGACCTTGAAAAGGTGGATGAAGCAATAATTGGAACGAAGAACATCATAACGGCGGCGGCCGAGGCCAAAGTCCAACGGGTTGTTTTCACGTCATCGATTGGGACCGTGCACATGAACCCTAATCGGAGCCCGGACATAGTGGTTGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAAAACAAAGAACAAACAGCATGGGCAATGGCAGAAGAAAAAGGGGTTGATCTAGTGGTGGTGAACCCAATGCTGGTGCTTGGACCATTACTACAACAAACAATAAATGCAAGTGTAGTTCATATAATGAAGTATTTGACAGGGTCAGTCAAGACCTATGTGAATGCAGTTCAAGGTTATGTTCATGTTAAGGATGTTGCAAAGGTTCACGTTTTGGTTTACGAGACTCCCTCCGCCTTCGGTAGATATATTTGTGCCGAAACTATGCTTCATCGCGCAGAATTGGTTGAAATTTTGGCTAATTTGTTTCCCGAGTATCCCGTTCCTACCAAGTGCTGTGATGAGAAGAACCCTAAGAAGAAAGCTTACAAATTTAGTGTAAAAAAGGTTAAGGACTTGGGCATGGCCGAGTTCATACCTGTGAAGCAATGCATATATGACACTGTGAGGAGTCTTCAAGAGAAGGGTCATCTTCCAACTCAACCTCGTCAATCTACGTCATTTTGCTAG 990 46.16 MPLAAASAAVASGQTVCVTGAGGFIASWLVKLLLQKGYNVRGTVRNPGWCLGDSKNAHLKELDGAKERLTLYAADLLHFESLKAAIMGCDGVFHAASPVTDDLEKVDEAIIGTKNIITAAAEAKVQRVVFTSSIGTVHMNPNRSPDIVVDESCWSDLDFCKNKEQTAWAMAEEKGVDLVVVNPMLVLGPLLQQTINASVVHIMKYLTGSVKTYVNAVQGYVHVKDVAKVHVLVYETPSAFGRYICAETMLHRAELVEILANLFPEYPVPTKCCDEKNPKKKAYKFSVKKVKDLGMAEFIPVKQCIYDTVRSLQEKGHLPTQPRQSTSFC 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 822203 824105 + CmoCh01G001890.1 Cmo01g00189 373672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00189 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 313 IPR036291 -
Cmo01g00189 329 PANTHER CINNAMOYL-COA REDUCTASE 11 322 - -
Cmo01g00189 329 CDD FR_SDR_e 16 294 - -
Cmo01g00189 329 Gene3D - 5 328 - -
Cmo01g00189 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 322 - -
Cmo01g00189 329 Pfam NAD dependent epimerase/dehydratase family 16 238 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00189 Cmo-Chr1:822203 Cmo14g01076 Cmo-Chr14:5989799 0 dispersed
Cmo01g00189 Cmo-Chr1:822203 Cmo01g00190 Cmo-Chr1:825389 0 tandem
Cmo01g00189 Cmo-Chr1:822203 Cmo14g01074 Cmo-Chr14:5943038 0 wgd
Cmo01g00189 Cmo-Chr1:822203 Cmo17g00865 Cmo-Chr17:7944762 1.42E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00189 K09753 - csv:101219069 514.998