Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00191 ATGGCTGCTGGAGGGCCTAATTCTGGGCAGCCACAGTTCTTTTCTAGGGCTGGAGATGAGAGTTTTTCGCACGCGCCATTGATCGAGAACACAGAAACTGATCAGATTGTTGTTCCTGATAAAAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGATTTCTTGTTTCTATTGCTTATATTGATCCTGGGAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGAGTTGCTTTGGATCATATTACTGGCTTCTTGCGCCGCCCTCGTCATACAATCTTTAGCAGCAAATCTAGGAGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTATTTGGTGCGGGGTTCTTCTGACAGGGCTTAGTACTCTACTCCTCCTTGCGCTGCAGCAATATGGGATTAGAAAGCTCGAATTCTTGATTGCATTTCTTGTATTGACAATTGCAATTTGCTTCTTTCTGGAGTTGGGCTATGCACAGCCCGATGTCGGAGAAATTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCTGCACTGGTGCTCTCTAGGAAAATACCCCGATCCATTCCTGGCATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGGTGGCTTTCTTCATTAACGTGGCCGTCATTTCAGTTAGTGGCGCGGTTTGCAATTCCCCAGATCTAAATAAGGAGGACCAAATGAGTTGCAGTGACTTGGACTTGAATGAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCCAAACTTTTTGCCATTGCTTTGTTAGCATCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGGCAGTATGTCATGCAGGGGTTTCTCGATTTGAAACTGATGCCATGGATCCGAAACTTTTTAACGCGAAGCTTAGCGATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGCCTTCTGGGGCTGGGAAGTTGATCATTATCTCATCGATGATTTTGTCGTTTGAACTCCCTTTTGCTCTCATTCCCCTTTTGAAGTTTACGAGCAGCGAGACGAAGATGGGTCCACATGTCAACTCCCTCGCGATTACGATACTGACATGGATCATCGGTTTCCTCATCATGGCTATAAATATATACTACCTCATAACCCGTTTCGTCCATGTGCTTATTCACAGTGATCTCCAACTCGCAGCAGTCATCTTCATAGGGATACTAGGATTTTCAGGCATGGCATTATATTTAGCTGGAATTGCTTATCTGGTTTTGAGAAAGACCAAGGAGATGACTCATCTCCTGGCACTAACAACAGAAGAAAGTGAGCGATTGAGCATCGAGCCGAGCAAGACATCAGCATATAACCTCCCGAGCGAAGAAACAGTAAGCATGCAATTGCCTCAGAGAATTAGAACAACCAATGATGTAAACTGA 1638 43.16 MAAGGPNSGQPQFFSRAGDESFSHAPLIENTETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILLASCAALVIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPIWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAQPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSIPGIKEACRFYMIESGFALLVAFFINVAVISVSGAVCNSPDLNKEDQMSCSDLDLNEASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLMPWIRNFLTRSLAIVPSLIVAIIGGPSGAGKLIIISSMILSFELPFALIPLLKFTSSETKMGPHVNSLAITILTWIIGFLIMAINIYYLITRFVHVLIHSDLQLAAVIFIGILGFSGMALYLAGIAYLVLRKTKEMTHLLALTTEESERLSIEPSKTSAYNLPSEETVSMQLPQRIRTTNDVN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 827593 832992 - CmoCh01G001910.1 Cmo01g00191 373674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00191 545 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PANTHER METAL TRANSPORTER NRAMP1 8 540 - -
Cmo01g00191 545 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo01g00191 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 540 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00191 Cmo-Chr1:827593 Cmo04g02499 Cmo-Chr4:18379971 4.62E-168 dispersed
Cmo01g00191 Cmo-Chr1:827593 Cmo14g01073 Cmo-Chr14:5910482 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00191 K21398 - csv:101209649 956.051