Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00196 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCTGCATCTGCTATAAATGTTAGGGAGGCTGTTAATAATAGGCCATCGGCCTCCGGAAGGGTGCCATTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTAAGATCTTGGATCCGGGTAGATTCTTCTGGGAACTCCCAGATTATTGAGATCGATAAGTTCACTGTGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGCCTGCTTGATCCTTTGTTTGTTTACCCTTCCACAATTCTTGGTAGAGAGAAGGCTATTGTGGTCAATCTGGAGCAGATTCGATGTATCATAACAGCTGAAGAAGTTTTGCTGTTAAATTCACTTGATAGTTATGTATTGCAGTATGTGGTAGAGCTACAAAGACGTTTGAAAACCACTGGGGTCGATGAGGTTTGGCAAAATGATGGAAATCATGGAGCTGACTTAAATCGAAGAAGAGGAAGTAGGAATTTCGATAATTTATTTGCAAACACCACCTCTCCTGATTATTTGCCCTTTGAGTTCAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCGAAAATCAGTACATTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCTCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGCGATCAGTCTGTGACTGGATACAGGCCAATCGATGGAGCATCTATTTCAGCTCCTGTTTCTCCTGTATCTTCACCGCCCGAAACTCGCAAGCTTGAGAAGAGCCTTAGCATTGCAAGGAGTCGGCACGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAGTATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATCGACAGCACTTTGAACAAGTTGACATCGTTGAAGGAGTACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAGTTTGAGCTACTGCTCACAACTGCAACATTCGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATATTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGTAAGTGGGATTATCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTTTAA 1347 42.91 MADLKERLLPPKPASAINVREAVNNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEIDKFTVMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNFDNLFANTTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRPIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLLITGVSGIIIFSAFVWFFRYKRLMPL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 883750 886664 - CmoCh01G001960.1 Cmo01g00196 373679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00196 448 CDD Mrs2_Mfm1p-like 53 445 IPR039204 -
Cmo01g00196 448 Pfam CorA-like Mg2+ transporter protein 337 436 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo01g00196 448 Gene3D - 41 124 - -
Cmo01g00196 448 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 448 IPR039204 -
Cmo01g00196 448 Coils Coil 229 256 - -
Cmo01g00196 448 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 448 - -
Cmo01g00196 448 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 385 438 IPR045863 -
Cmo01g00196 448 Gene3D Magnesium transport protein CorA, transmembrane region 386 446 - -
Cmo01g00196 448 Gene3D Magnesium transport protein CorA, transmembrane region 125 379 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00196 Cmo14g01066 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00196 Cmo-Chr1:883750 Cmo11g01427 Cmo-Chr11:10049721 1.44E-116 dispersed
Cmo12g00082 Cmo-Chr12:443820 Cmo01g00196 Cmo-Chr1:883750 2.48E-148 transposed
Cmo01g00196 Cmo-Chr1:883750 Cmo14g01066 Cmo-Chr14:5873476 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00196 K16075 - csv:101217419 811.986