Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00196 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCTGCATCTGCTATAAATGTTAGGGAGGCTGTTAATAATAGGCCATCGGCCTCCGGAAGGGTGCCATTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTAAGATCTTGGATCCGGGTAGATTCTTCTGGGAACTCCCAGATTATTGAGATCGATAAGTTCACTGTGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGCCTGCTTGATCCTTTGTTTGTTTACCCTTCCACAATTCTTGGTAGAGAGAAGGCTATTGTGGTCAATCTGGAGCAGATTCGATGTATCATAACAGCTGAAGAAGTTTTGCTGTTAAATTCACTTGATAGTTATGTATTGCAGTATGTGGTAGAGCTACAAAGACGTTTGAAAACCACTGGGGTCGATGAGGTTTGGCAAAATGATGGAAATCATGGAGCTGACTTAAATCGAAGAAGAGGAAGTAGGAATTTCGATAATTTATTTGCAAACACCACCTCTCCTGATTATTTGCCCTTTGAGTTCAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCGAAAATCAGTACATTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCTCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGCGATCAGTCTGTGACTGGATACAGGCCAATCGATGGAGCATCTATTTCAGCTCCTGTTTCTCCTGTATCTTCACCGCCCGAAACTCGCAAGCTTGAGAAGAGCCTTAGCATTGCAAGGAGTCGGCACGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAGTATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATCGACAGCACTTTGAACAAGTTGACATCGTTGAAGGAGTACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAGTTTGAGCTACTGCTCACAACTGCAACATTCGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATATTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGTAAGTGGGATTATCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTTTAA 1347 42.91 MADLKERLLPPKPASAINVREAVNNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEIDKFTVMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNFDNLFANTTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRPIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLLITGVSGIIIFSAFVWFFRYKRLMPL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 883750 886664 - CmoCh01G001960.1 Cmo01g00196 373679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00196 448 CDD Mrs2_Mfm1p-like 53 445 IPR039204 -
Cmo01g00196 448 Pfam CorA-like Mg2+ transporter protein 337 436 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo01g00196 448 Gene3D - 41 124 - -
Cmo01g00196 448 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 448 IPR039204 -
Cmo01g00196 448 Coils Coil 229 256 - -
Cmo01g00196 448 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 448 - -
Cmo01g00196 448 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 385 438 IPR045863 -
Cmo01g00196 448 Gene3D Magnesium transport protein CorA, transmembrane region 386 446 - -
Cmo01g00196 448 Gene3D Magnesium transport protein CorA, transmembrane region 125 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00196 K16075 MRS2, MFM1; magnesium transporter - csv:101217419 811.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00196 Cmo14g01066 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00196 Cmo-Chr1:883750 Cmo11g01427 Cmo-Chr11:10049721 1.44E-116 dispersed
Cmo12g00082 Cmo-Chr12:443820 Cmo01g00196 Cmo-Chr1:883750 2.48E-148 transposed
Cmo01g00196 Cmo-Chr1:883750 Cmo14g01066 Cmo-Chr14:5873476 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g869 . . . . . . . Bma13g00660 . . . Cma14g01051 Car01g00165 Car14g00950 . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00506 . Bda12g00562 . . . . . Cmo01g00196 Cmo14g01066 . . . . Cpe02g01612 Cpe03g00907 . . . . . . . . . . . . . . . Csa03g02968 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g01066 CST 1 447 MRS2 Gene Family AT1G16010 84.1 4.0e-205 711.4
Cmo01g00196 CST 1 448 MRS2 Gene Family AT1G16010 83.5 3.7e-203 704.9
Cmo12g00082 . 8 381 MRS2 Gene Family AT1G16010 53.7 7.4e-111 398.3
Cmo17g00183 CST 1 366 MRS2 Gene Family AT5G64560 79.3 7.7e-157 550.8
Cmo08g01086 CST 1 358 MRS2 Gene Family AT5G64560 79.3 1.1e-155 547.0
Cmo19g00057 . 1 353 MRS2 Gene Family AT5G64560 64.3 2.8e-114 409.5
Cmo11g01427 CST 39 498 MRS2 Gene Family AT3G19640 64.4 2.6e-149 526.2
Cmo19g00556 CST 14 539 MRS2 Gene Family AT3G19640 55.3 1.9e-139 493.4
Cmo04g00575 . 1 456 MRS2 Gene Family AT3G58970 62.5 1.5e-143 506.9
Cmo16g00423 CST 1 457 MRS2 Gene Family AT3G58970 58.3 1.8e-125 446.8
Cmo12g00082 . 9 381 MRS2 Gene Family AT2G03620 66.6 3.0e-133 472.6
Cmo14g01066 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.6e-113 406.4
Cmo01g00196 CST 13 448 MRS2 Gene Family AT2G03620 52.9 1.7e-112 403.7
Cmo08g01086 CST 1 320 MRS2 Gene Family AT5G09690 77.5 1.1e-127 453.8
Cmo17g00183 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.2e-126 450.3
Cmo19g00057 . 1 314 MRS2 Gene Family AT5G09690 62.0 1.9e-95 346.7
Cmo01g00196 CST 40 384 MRS2 Gene Family AT5G09690 50.1 3.5e-78 289.3
Cmo14g01066 CST 40 383 MRS2 Gene Family AT5G09690 50.6 4.6e-78 288.9
Cmo08g01086 CST 23 280 MRS2 Gene Family AT5G09720 70.1 1.4e-89 327.0
Cmo17g00183 CST 23 288 MRS2 Gene Family AT5G09720 66.8 6.5e-87 318.2
Cmo19g00057 . 37 285 MRS2 Gene Family AT5G09720 58.6 1.4e-68 257.3
Cmo14g01066 CST 1 447 MRS2 Gene Family AT1G80900 82.6 8.6e-200 693.7
Cmo01g00196 CST 1 448 MRS2 Gene Family AT1G80900 81.7 4.0e-197 684.9
Cmo12g00082 . 5 381 MRS2 Gene Family AT1G80900 54.1 1.2e-108 391.0
Cmo13g00275 . 114 453 MRS2 Gene Family AT5G22830 83.8 1.9e-157 553.1
Cmo12g00817 . 114 453 MRS2 Gene Family AT5G22830 81.8 5.3e-152 535.0
Cmo13g00277 . 114 257 MRS2 Gene Family AT5G22830 79.9 4.0e-59 226.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00196 Cmo_Chr01 FPKM 262.773376 281.433136 285.973389 280.119476 43.498505 35.33744 46.086895 38.967594 41.35619 42.492355