Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00200 ATGGAGAAGAAGACTTATCCGATTGGGGAAGATTCTTATGTTCTGTACGAGGAGGTTGGGCAGGGGGTGAGTGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAATGAGATCGTCGCCATCAAGATCCTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCAAATGTTCTTAAATCACACTGCTCCTTTGTCAATGGACATAATTTGTGGATTGTTATGCCATACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTGATAGCAACAATATTACGAGAAGTGTTGAAGGGAGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGACTCAGGTGATAGGCAACGTGTGAGGAATACATTCGTGGGGACACCATGCTGGATGGCACCTGAAGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCTATAACTGGGTTAGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTATTGATGATGACCTTGCAAAATGCACCCCCTGGCCTTGATTATGAGAGGGACAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCGAGTTGCTTGGTGAAAGATCCTTCAAAACGACCTTCTGCAAGTAAACTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTCCCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGAATCAGTGGATGGAATTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCAGTGAAGTAGGGAGCTCCAGTAACTTATCTTCTCTTGATGTGCAAGAAAGGAAATTACAATATCAAAATTCTTCAGAACTTTCAGATACTGAAGAGAATGGCATGTTGCGGAGACTACCCTCCATGAAAGCTAATGATTCATTAGATGGTAAAAGATCTATGAATGATTCAACAATTCTTGGTCCTTGCTCCCAACAACATTCTTCGCCTCGCAATGATAATCAAACTGAGAATGGTTCCTGTGAAGAGCTTCCTTTGGAGAACAGCAAAAGAATACTGGGGAGTACTCCTAATTGTAGTCAACATAAAAGAAATGTTTCTTCCAATAACACCGTTCAACAAGAAACCACTTCACCTCTGAACAGAAGAGAGAGTTACGAGTCAGAAAAGAGTGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAAGCTGTAGATGATGTGCTTTCTGATTCTTATTCTAAAGATCCGAAGTCAACATTAGTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGACAAGGCAGTTGCACCCCCTCTTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTCTGCTACTCCTCTTCTACCTTCTAATGTACCAACTCCTCTACTGACACCTCTACCCTCATCTGATGCTATACCAATTAACACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAACGGGAGGATATTTTGAATCTAATGAGGCAAATCTCAATCGGAGATTTTCCAGCCGATGGTGTGGCTGATGTCTCATCGGCACAGATAACAACCGAGAAATCTTTGCTTGAGGCAGCTCATGAAAGGGAAAAGGATTTACTCAACGAAGTAACTGAATTACAGTGGAGGATATTACGTGCCAGAGATGAAATCCAAAGATTAAGATCAAACAATGCAGGCTAA 2085 40.77 MEKKTYPIGEDSYVLYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSSDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSSNLSSLDVQERKLQYQNSSELSDTEENGMLRRLPSMKANDSLDGKRSMNDSTILGPCSQQHSSPRNDNQTENGSCEELPLENSKRILGSTPNCSQHKRNVSSNNTVQQETTSPLNRRESYESEKSVANGSVAIGITSQAVDDVLSDSYSKDPKSTLVSPATNDEEQDEKAKVPVIQQKGRFKVTSENVDVDKAVAPPLLQKSHSMQVITSNSATPLLPSNVPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQREDILNLMRQISIGDFPADGVADVSSAQITTEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLRSNNAG 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 897957 904926 + CmoCh01G002000.1 Cmo01g00200 373683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00200 694 MobiDBLite consensus disorder prediction 378 490 - -
Cmo01g00200 694 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 692 - -
Cmo01g00200 694 MobiDBLite consensus disorder prediction 409 441 - -
Cmo01g00200 694 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 692 - -
Cmo01g00200 694 Coils Coil 657 691 - -
Cmo01g00200 694 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cmo01g00200 694 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Cmo01g00200 694 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00200 694 MobiDBLite consensus disorder prediction 449 479 - -
Cmo01g00200 694 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00200 694 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Cmo01g00200 694 CDD STKc_OSR1_SPAK 11 274 - -
Cmo01g00200 694 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00200 694 MobiDBLite consensus disorder prediction 509 525 - -
Cmo01g00200 694 MobiDBLite consensus disorder prediction 509 535 - -
Cmo01g00200 694 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00200 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101211076 1152.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00200 Cmo-Chr1:897957 Cmo04g02836 Cmo-Chr4:20276632 0 dispersed
Cmo01g00200 Cmo-Chr1:897957 Cmo15g00350 Cmo-Chr15:1636510 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g01271 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 62.2 8.6e-223 770.8
Cmo09g00844 CST 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 61.4 2.2e-218 756.1
Cmo01g01271 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 64.0 1.0e-228 790.4
Cmo09g00844 CST 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 62.7 4.9e-226 781.6
Cmo18g01122 . 4 831 MAP Kinase Kinase Kinase Kinase AT1G69220 57.4 1.2e-231 800.4
Cmo01g01271 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 8.3e-68 256.1
Cmo09g00844 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 1.1e-67 255.8
Cmo04g02836 CST 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 65.0 2.6e-248 855.5
Cmo15g00350 CST 1 727 MAP Kinase Kinase Kinase Kinase AT5G14720 61.0 4.1e-238 821.6
Cmo16g01274 . 6 143 MAP Kinase Kinase Kinase Kinase AT5G14720 55.0 1.6e-48 191.8
Cmo06g00592 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 6.4e-245 844.3
Cmo16g01271 CST 18 489 MAP Kinase Kinase Kinase Kinase AT4G24100 53.8 6.9e-114 409.1
Cmo16g01274 . 7 143 MAP Kinase Kinase Kinase Kinase AT4G24100 62.6 4.1e-58 223.8
Cmo06g00592 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 4.8e-242 834.7
Cmo16g01271 CST 18 490 MAP Kinase Kinase Kinase Kinase AT4G10730 54.7 4.1e-116 416.4
Cmo16g01274 . 11 143 MAP Kinase Kinase Kinase Kinase AT4G10730 61.1 6.9e-55 213.0
Cmo01g00200 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 51.3 2.5e-133 473.4
Cmo06g00592 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.6e-116 417.5
Cmo01g00200 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 2.1e-218 756.1
Cmo15g00350 CST 1 327 MAP Kinase Kinase Kinase Kinase AT1G23700 59.4 1.3e-103 374.4
Cmo04g02836 CST 6 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 2.0e-101 367.1
Cmo01g00200 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 7.4e-88 322.0
Cmo06g00592 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 1.0e-73 275.0
Cmo14g01826 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 1.5e-144 510.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74014 PF00069 Pkinase 6.70E-59 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00200 Cmo_Chr01 FPKM 59.308689 62.808823 11.923458 12.363065 9.999791 9.829647 9.637382 9.309089 10.451142 9.197629