Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00200 ATGGAGAAGAAGACTTATCCGATTGGGGAAGATTCTTATGTTCTGTACGAGGAGGTTGGGCAGGGGGTGAGTGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAATGAGATCGTCGCCATCAAGATCCTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCAAATGTTCTTAAATCACACTGCTCCTTTGTCAATGGACATAATTTGTGGATTGTTATGCCATACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTGATAGCAACAATATTACGAGAAGTGTTGAAGGGAGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGACTCAGGTGATAGGCAACGTGTGAGGAATACATTCGTGGGGACACCATGCTGGATGGCACCTGAAGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCTATAACTGGGTTAGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTATTGATGATGACCTTGCAAAATGCACCCCCTGGCCTTGATTATGAGAGGGACAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCGAGTTGCTTGGTGAAAGATCCTTCAAAACGACCTTCTGCAAGTAAACTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTCCCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGAATCAGTGGATGGAATTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCAGTGAAGTAGGGAGCTCCAGTAACTTATCTTCTCTTGATGTGCAAGAAAGGAAATTACAATATCAAAATTCTTCAGAACTTTCAGATACTGAAGAGAATGGCATGTTGCGGAGACTACCCTCCATGAAAGCTAATGATTCATTAGATGGTAAAAGATCTATGAATGATTCAACAATTCTTGGTCCTTGCTCCCAACAACATTCTTCGCCTCGCAATGATAATCAAACTGAGAATGGTTCCTGTGAAGAGCTTCCTTTGGAGAACAGCAAAAGAATACTGGGGAGTACTCCTAATTGTAGTCAACATAAAAGAAATGTTTCTTCCAATAACACCGTTCAACAAGAAACCACTTCACCTCTGAACAGAAGAGAGAGTTACGAGTCAGAAAAGAGTGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAAGCTGTAGATGATGTGCTTTCTGATTCTTATTCTAAAGATCCGAAGTCAACATTAGTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGACAAGGCAGTTGCACCCCCTCTTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTCTGCTACTCCTCTTCTACCTTCTAATGTACCAACTCCTCTACTGACACCTCTACCCTCATCTGATGCTATACCAATTAACACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAACGGGAGGATATTTTGAATCTAATGAGGCAAATCTCAATCGGAGATTTTCCAGCCGATGGTGTGGCTGATGTCTCATCGGCACAGATAACAACCGAGAAATCTTTGCTTGAGGCAGCTCATGAAAGGGAAAAGGATTTACTCAACGAAGTAACTGAATTACAGTGGAGGATATTACGTGCCAGAGATGAAATCCAAAGATTAAGATCAAACAATGCAGGCTAA 2085 40.77 MEKKTYPIGEDSYVLYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSSDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSSNLSSLDVQERKLQYQNSSELSDTEENGMLRRLPSMKANDSLDGKRSMNDSTILGPCSQQHSSPRNDNQTENGSCEELPLENSKRILGSTPNCSQHKRNVSSNNTVQQETTSPLNRRESYESEKSVANGSVAIGITSQAVDDVLSDSYSKDPKSTLVSPATNDEEQDEKAKVPVIQQKGRFKVTSENVDVDKAVAPPLLQKSHSMQVITSNSATPLLPSNVPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQREDILNLMRQISIGDFPADGVADVSSAQITTEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLRSNNAG 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 897957 904926 + CmoCh01G002000.1 Cmo01g00200 373683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00200 694 MobiDBLite consensus disorder prediction 378 490 - -
Cmo01g00200 694 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 692 - -
Cmo01g00200 694 MobiDBLite consensus disorder prediction 409 441 - -
Cmo01g00200 694 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 692 - -
Cmo01g00200 694 Coils Coil 657 691 - -
Cmo01g00200 694 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cmo01g00200 694 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Cmo01g00200 694 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00200 694 MobiDBLite consensus disorder prediction 449 479 - -
Cmo01g00200 694 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00200 694 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Cmo01g00200 694 CDD STKc_OSR1_SPAK 11 274 - -
Cmo01g00200 694 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00200 694 MobiDBLite consensus disorder prediction 509 525 - -
Cmo01g00200 694 MobiDBLite consensus disorder prediction 509 535 - -
Cmo01g00200 694 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00200 Cmo-Chr1:897957 Cmo04g02836 Cmo-Chr4:20276632 0 dispersed
Cmo01g00200 Cmo-Chr1:897957 Cmo15g00350 Cmo-Chr15:1636510 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74014 PF00069 Pkinase 6.70E-59 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00200 K08835 - csv:101211076 1152.5