Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00217 ATGGAGTTGGGTTTGAGGCTTGGAGATCAACAACAAACCCACAGCCACAACCCTAAGCTTCTTCACCTCGCTCTTCTTCCTCCTACTCCTACTCCAGACGGCGGCGGTGGGGAATCTCCGAGAAACCCATATCTGTGCTCCTCCTTGGAGCTGGGATTGTATGAAGTGGAAGAGCATCAGGGAAATAGCGACAGAGGTTGCTCTAGAGGCAGCGATGAAGATGATCAAATTTTGGGTTCCAGAAAGAAACTGCGGCTTTCCAGAGAACAGTCGGCGTTCCTTGAAGACAGCTTCAAAGATCATCATACACTTTACCCTAAGCAAAAGGTAGAACTTGCAAGAAGGCTAAATCTTCGTCCACGCCAAGTAGAAGTGTGGTTTCAAAACAGACGAGCAAGAACCAAGCTGAAGCAAACCGAAGTTGACTGTGAGTACTTGAAAAACTGTTGCCAAACACTAACCCAACAAAACAGGAAGCTTCGAAAGGAGCTTCAAGATTTAAGAGCTTTGAAAACCACTGATTCTCTCTTCATGCATTCCCCCGCCACCACTCTCACCATGTGTGCGTCTTGTGAACGCGCCGCCGTTCTTCACCCGCTGAACTCCAAGGCTTCTGGGTTTTCGTTTACTACAAATGGGTCCTCTCCACAATAA 654 47.86 MELGLRLGDQQQTHSHNPKLLHLALLPPTPTPDGGGGESPRNPYLCSSLELGLYEVEEHQGNSDRGCSRGSDEDDQILGSRKKLRLSREQSAFLEDSFKDHHTLYPKQKVELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQQNRKLRKELQDLRALKTTDSLFMHSPATTLTMCASCERAAVLHPLNSKASGFSFTTNGSSPQ 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 961002 963178 + CmoCh01G002170.1 Cmo01g00217 373700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00217 217 SMART HOX_1 79 141 IPR001356 GO:0003677
Cmo01g00217 217 SUPERFAMILY Homeodomain-like 74 138 IPR009057 -
Cmo01g00217 217 SMART halz 137 180 IPR003106 GO:0006355|GO:0043565
Cmo01g00217 217 MobiDBLite consensus disorder prediction 1 42 - -
Cmo01g00217 217 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Cmo01g00217 217 CDD homeodomain 81 138 IPR001356 GO:0003677
Cmo01g00217 217 Pfam Homeodomain 81 135 IPR001356 GO:0003677
Cmo01g00217 217 Pfam Homeobox associated leucine zipper 137 171 IPR003106 GO:0006355|GO:0043565
Cmo01g00217 217 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Cmo01g00217 217 Gene3D - 85 135 - -
Cmo01g00217 217 Coils Coil 150 173 - -
Cmo01g00217 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 56 212 - -
Cmo01g00217 217 PANTHER - 56 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00217 Cmo-Chr1:961002 Cmo14g00412 Cmo-Chr14:1958755 1.06E-61 dispersed
Cmo01g00217 Cmo-Chr1:961002 Cmo17g00902 Cmo-Chr17:8159676 4.27E-68 wgd
Cmo01g00217 Cmo-Chr1:961002 Cmo08g00548 Cmo-Chr8:3379157 6.32E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9008 PF00046 Homeodomain 3.40E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00217 K09338 - egr:104425500 213.001