Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00234 | ATGGCGTTGGCTAGTCGATTGCGATCCACCATCCCCGTCCTCAGCAAGTTTTTGAGAAATGAATCGTCCTGCACTCCGGTACTGCTCTCAAGGACTTATGCCGCTACATCAGGGAAACATGAACAAAAGGTGAAGGTGCCTCTTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTTTGTATATAGCTGCAATAAAAGCTAATTCTCTAGACAAGGTGGAGTCTGAGCTTTTTAACCTCGTTGAGGCTATTAAGAAAAGTCCTATATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAGACTAGAGTTAAAGCTATCAATGAAATTTCTGCTGAAGCAAAATTTTCAGACGTTGTTAAGAACTTTTTGGTTGTGTTGGCTGAGAATGGGAGGCTGAGATATATAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCACCACAAGAAGAGAACGAACTGAAGGAGACATTGCAAGATATTATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAAAAGATTGATCCCAGCATACTTGGTGGTCTAATTGTAGAATTCAGCGAGAAAGTATTTGACGTGTCTATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTACTCTTGATGGCCTCTAG | 708 | 42.8 | MALASRLRSTIPVLSKFLRNESSCTPVLLSRTYAATSGKHEQKVKVPLALFGGSGNYASALYIAAIKANSLDKVESELFNLVEAIKKSPIFAQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYIDSIAKRFLELTMAHKGEVKAVVTTVIPIPPQEENELKETLQDIIGQGKKVKLEQKIDPSILGGLIVEFSEKVFDVSIKTRARQMERFLRQPVTLDGL | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1052110 | 1056225 | + | CmoCh01G002340.1 | Cmo01g00234 | 373717 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00234 | 235 | PRINTS | ATP synthase delta subunit signature | 53 | 72 | IPR000711 | GO:0015986|GO:0046933 | |
Cmo01g00234 | 235 | PRINTS | ATP synthase delta subunit signature | 123 | 134 | IPR000711 | GO:0015986|GO:0046933 | |
Cmo01g00234 | 235 | PRINTS | ATP synthase delta subunit signature | 134 | 148 | IPR000711 | GO:0015986|GO:0046933 | |
Cmo01g00234 | 235 | PRINTS | ATP synthase delta subunit signature | 186 | 201 | IPR000711 | GO:0015986|GO:0046933 | |
Cmo01g00234 | 235 | PRINTS | ATP synthase delta subunit signature | 201 | 219 | IPR000711 | GO:0015986|GO:0046933 | |
Cmo01g00234 | 235 | Hamap | ATP synthase subunit delta [atpD]. | 49 | 228 | IPR000711 | GO:0015986|GO:0046933 | |
Cmo01g00234 | 235 | Pfam | ATP synthase delta (OSCP) subunit | 55 | 224 | IPR000711 | GO:0015986|GO:0046933 | |
Cmo01g00234 | 235 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 188 | 207 | IPR020781 | GO:0015986|GO:0016020|GO:0046933 | |
Cmo01g00234 | 235 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 54 | 155 | IPR026015 | - | |
Cmo01g00234 | 235 | TIGRFAM | ATP_synt_delta: ATP synthase F1, delta subunit | 56 | 225 | IPR000711 | GO:0015986|GO:0046933 | |
Cmo01g00234 | 235 | Gene3D | - | 53 | 146 | IPR026015 | - | |
Cmo01g00234 | 235 | PANTHER | ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL | 27 | 228 | - | - | |
Cmo01g00234 | 235 | PANTHER | ATP SYNTHASE DELTA CHAIN | 27 | 228 | IPR000711 | GO:0015986|GO:0046933 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g00234 | Cmo17g00927 | CCT | |
Cmo01g00234 | Cmo14g01022 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00234 | Cmo-Chr1:1052110 | Cmo09g01238 | Cmo-Chr9:10615482 | 9.22E-10 | dispersed | |
Cmo01g00234 | Cmo-Chr1:1052110 | Cmo14g01022 | Cmo-Chr14:5566786 | 1.53E-154 | wgd | |
Cmo01g00234 | Cmo-Chr1:1052110 | Cmo17g00927 | Cmo-Chr17:8264452 | 1.25E-109 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00234 | K02137 | - | tcc:18614630 | 337.035 |