Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00234 ATGGCGTTGGCTAGTCGATTGCGATCCACCATCCCCGTCCTCAGCAAGTTTTTGAGAAATGAATCGTCCTGCACTCCGGTACTGCTCTCAAGGACTTATGCCGCTACATCAGGGAAACATGAACAAAAGGTGAAGGTGCCTCTTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTTTGTATATAGCTGCAATAAAAGCTAATTCTCTAGACAAGGTGGAGTCTGAGCTTTTTAACCTCGTTGAGGCTATTAAGAAAAGTCCTATATTTGCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAGACTAGAGTTAAAGCTATCAATGAAATTTCTGCTGAAGCAAAATTTTCAGACGTTGTTAAGAACTTTTTGGTTGTGTTGGCTGAGAATGGGAGGCTGAGATATATAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCACCACAAGAAGAGAACGAACTGAAGGAGACATTGCAAGATATTATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAAAAGATTGATCCCAGCATACTTGGTGGTCTAATTGTAGAATTCAGCGAGAAAGTATTTGACGTGTCTATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTACTCTTGATGGCCTCTAG 708 42.8 MALASRLRSTIPVLSKFLRNESSCTPVLLSRTYAATSGKHEQKVKVPLALFGGSGNYASALYIAAIKANSLDKVESELFNLVEAIKKSPIFAQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYIDSIAKRFLELTMAHKGEVKAVVTTVIPIPPQEENELKETLQDIIGQGKKVKLEQKIDPSILGGLIVEFSEKVFDVSIKTRARQMERFLRQPVTLDGL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1052110 1056225 + CmoCh01G002340.1 Cmo01g00234 373717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00234 235 PRINTS ATP synthase delta subunit signature 53 72 IPR000711 GO:0015986|GO:0046933
Cmo01g00234 235 PRINTS ATP synthase delta subunit signature 123 134 IPR000711 GO:0015986|GO:0046933
Cmo01g00234 235 PRINTS ATP synthase delta subunit signature 134 148 IPR000711 GO:0015986|GO:0046933
Cmo01g00234 235 PRINTS ATP synthase delta subunit signature 186 201 IPR000711 GO:0015986|GO:0046933
Cmo01g00234 235 PRINTS ATP synthase delta subunit signature 201 219 IPR000711 GO:0015986|GO:0046933
Cmo01g00234 235 Hamap ATP synthase subunit delta [atpD]. 49 228 IPR000711 GO:0015986|GO:0046933
Cmo01g00234 235 Pfam ATP synthase delta (OSCP) subunit 55 224 IPR000711 GO:0015986|GO:0046933
Cmo01g00234 235 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 188 207 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cmo01g00234 235 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 155 IPR026015 -
Cmo01g00234 235 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 56 225 IPR000711 GO:0015986|GO:0046933
Cmo01g00234 235 Gene3D - 53 146 IPR026015 -
Cmo01g00234 235 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 27 228 - -
Cmo01g00234 235 PANTHER ATP SYNTHASE DELTA CHAIN 27 228 IPR000711 GO:0015986|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00234 Cmo17g00927 CCT
Cmo01g00234 Cmo14g01022 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00234 Cmo-Chr1:1052110 Cmo09g01238 Cmo-Chr9:10615482 9.22E-10 dispersed
Cmo01g00234 Cmo-Chr1:1052110 Cmo14g01022 Cmo-Chr14:5566786 1.53E-154 wgd
Cmo01g00234 Cmo-Chr1:1052110 Cmo17g00927 Cmo-Chr17:8264452 1.25E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00234 K02137 - tcc:18614630 337.035