Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00238 ATGTGCGGTGGTCCAGAAAAATCCAATTCCGCATCTACTACTACATCAGCAAGCTCACCTAATCCCAAAGACATGAGTCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCATCAGACAACGATGCCGAAGGCTTCAAGCGTTTGATGGGGTCTGATTTGTTATCACTAAACAAGTCTGGGCTCTGGTATGTTCGCCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGAACGCCCCTGATGGTTGCTGCAACATATGGTTGTGTTGATGTTCTGAAACTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAAAGCACGGCTCTCCACTGTGCTACCTCCAGTGGATCTGTGAATGCAGTCGATATTGTTGATTTACTTTTGTCTGCTGGTGCTGACCCAAACGCGAAGGATATTAATGGCGATCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAATGTTCAGGCTTGAGGAACTTCTCAATAATCATTCAAATGGGTCCATGGATGTTTCCTGTTTACGTTTGTCAATCAAAATGCCTGATTCAGGGTCACCACCACTTTCCTCATCGTTGGAGGATGAATTTCCATCTCCACCCAAGTCAATGTCTTCTCCCAAATTTACTGATGGGTTTGCAACTACAAAGGAAAAGAAAGAATATCCAATTGATCCATCACTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTGAGGCCTTGTTCTCGGGCGTATTCCCATGATTGGACTGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAAGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGCAAGGATGGCACGAGTTGCAATAGGCGGGTCTGTTTCTTTGCTCACACAAATGAAGAACTAAGGCCACTATATGTGTCTACTGGATCTGCTGTTCCTTCCCCACGATCCATTGGGTCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGATCCCCATCATCAGTATCAGCTTTATCTCCATCTCCATTTGCTCAGTCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCAACTCTTCATCTTCCAGGAAGTAACCTTCAATCCAGTCGGTTAAGATCATCTCTGAATGCCAGGGATATGCCTCTAGAGGATTTTAATGTCTTGCCAAACTTTGACAACCAGCCACGAATTTTGAATGATATTAACTGTTTCTCTCAGCCTCGTCCGAGTGCCATTTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTTGAAGAGCTATTTTCTAATGAAATCCCTTTGTCTCCCCGATTCTCTGATCCAGCCACCAATGTCTTTTCCCCTACTCGCAAATCGACATTACTAAACCAATTTCAGCAGCAGCAGCAGAACATGTTATCACCTATAAATACAAGCATTATGTCTCCTAAGACTGCTGATCAGCCTTTGTTGCAGGCCTCTTTTGGAGTGTCATCGCCGGGAAGGATGTCGCCTAGAAGCACAGAGCCACTGTCTCCAATGGGATCTAGGTTTTCTGCTTTTGTACAGCGTGAAAAGCAACATCTCCGCAGTCTCAGCTCAAGGGAGCTTGGATCCAATGTCCCAAGCTCGTTGATTGGATCTCCTGTCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCAGTTGGTAAGAATGAACTGGGTCAACTGCGTAGATCATCTTCTTTCGAGATCGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCGCCTGAGATGCTAAGAGAGAAGTCGGCCGCGCCCAGGATGGGTGGTGCTGCAGCATCCGGTGAGGGTCTAACTTCTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2178 45.59 MCGGPEKSNSASTTTSASSPNPKDMSHLTVDCEDSFYSLLELASDNDAEGFKRLMGSDLLSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNAKDINGDRPVDVIFVHPKLQKQNTMFRLEELLNNHSNGSMDVSCLRLSIKMPDSGSPPLSSSLEDEFPSPPKSMSSPKFTDGFATTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFAQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDFNVLPNFDNQPRILNDINCFSQPRPSAISVSRSGWTQTLTPNNLEELFSNEIPLSPRFSDPATNVFSPTRKSTLLNQFQQQQQNMLSPINTSIMSPKTADQPLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRSLSSRELGSNVPSSLIGSPVNSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEIGNNGEEPDLSWVQSLVKESPPEMLREKSAAPRMGGAAASGEGLTSTKSQLESTDHSVIGAWLEQMQLDQLVV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1076502 1078679 - CmoCh01G002380.1 Cmo01g00238 373721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00238 725 ProSiteProfiles Ankyrin repeat profile. 116 151 IPR002110 GO:0005515
Cmo01g00238 725 ProSiteProfiles Ankyrin repeat region circular profile. 116 150 - -
Cmo01g00238 725 MobiDBLite consensus disorder prediction 1 25 - -
Cmo01g00238 725 Pfam Ankyrin repeats (3 copies) 73 150 IPR002110 GO:0005515
Cmo01g00238 725 PRINTS Ankyrin repeat signature 82 97 IPR002110 GO:0005515
Cmo01g00238 725 PRINTS Ankyrin repeat signature 135 149 IPR002110 GO:0005515
Cmo01g00238 725 SMART ANK_2a 81 111 IPR002110 GO:0005515
Cmo01g00238 725 SMART ANK_2a 116 148 IPR002110 GO:0005515
Cmo01g00238 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Cmo01g00238 725 MobiDBLite consensus disorder prediction 201 226 - -
Cmo01g00238 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Cmo01g00238 725 SUPERFAMILY Ankyrin repeat 80 161 IPR036770 -
Cmo01g00238 725 Gene3D - 297 360 - -
Cmo01g00238 725 MobiDBLite consensus disorder prediction 1 26 - -
Cmo01g00238 725 MobiDBLite consensus disorder prediction 673 703 - -
Cmo01g00238 725 MobiDBLite consensus disorder prediction 200 226 - -
Cmo01g00238 725 Gene3D - 35 182 IPR036770 -
Cmo01g00238 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Cmo01g00238 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Cmo01g00238 725 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 18 723 - -
Cmo01g00238 725 MobiDBLite consensus disorder prediction 402 422 - -
Cmo01g00238 725 PANTHER UNKEMPT FAMILY MEMBER 18 723 IPR045234 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00238 Cmo14g01019 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00238 Cmo-Chr1:1076502 Cmo14g00457 Cmo-Chr14:2196576 0 dispersed
Cmo01g00238 Cmo-Chr1:1076502 Cmo14g01019 Cmo-Chr14:5542971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9010 PF12796 Ank_2 8.50E-11 CL0465 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00238 - - csv:101205376 1288.48