Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00251 ATGGGTCGAGGGAAGATTGAGATCAAACGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCAAAGCGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGCTCTGGCATGAAACATACTCTTTCAAGATACAACAGATGTATAGAATCTTCAGAGACTCCGATAGACGGACACAAGGCTGAGTATCTTCATCTCCAGAAGCAAGAGCATGAGGAGGTAGACAATCTACGAGATGAAATAACGACTCTGCAAATGAAACAATTGCAGCTACTGGGAAAGGATCTAACTGGCTTGGGCTTCAAGGAATTGCAAAACCTAGAGCAACAACTAAATGAAGGGCTCTTACTCGTGAAAGAGAAGAAGGAACAGTTACTGATGGAACAACTAGAGCAATCAAGGGTACAGGTCAGCGAGCTTCGATGTCTGTTTCCTCCAGTCGACTGTCCGCTTCCTGCTTATCTTGAATACTGCTCCCTAGAGAAGAAGAAGGCAGGCATTAGAGTCCCCGATGTCGCCTGCAACTCCGAAATAGAAAGAGGAGATTCCGACACCACCTTGCACTTGGGGCTACCATCACATGTCTATTGCAAGAGAAAGGAGGCTGAAAGAGATACTCATTCAAATGATTCAGGGAGTCAAATGGGCCTACTCTGA 729 44.72 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCIESSETPIDGHKAEYLHLQKQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQVSELRCLFPPVDCPLPAYLEYCSLEKKKAGIRVPDVACNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNDSGSQMGLL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1127476 1130491 - CmoCh01G002510.1 Cmo01g00251 373734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00251 242 PANTHER MADS BOX PROTEIN 1 220 - -
Cmo01g00251 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo01g00251 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo01g00251 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cmo01g00251 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo01g00251 242 Coils Coil 91 111 - -
Cmo01g00251 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cmo01g00251 242 ProSiteProfiles K-box domain profile. 91 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g00251 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo01g00251 242 Coils Coil 128 148 - -
Cmo01g00251 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 220 - -
Cmo01g00251 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo01g00251 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo01g00251 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo01g00251 242 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Cmo01g00251 242 Pfam K-box region 91 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00251 Cmo-Chr1:1127476 Cmo03g00054 Cmo-Chr3:889514 1.95E-49 dispersed
Cmo01g00251 Cmo-Chr1:1127476 Cmo08g00911 Cmo-Chr8:5934466 6.36E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9011 PF01486 K-box 1.20E-14 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00251 - - cmax:111493101 432.18