Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00266 ATGGAGAGGAATCCAAGCAAGCAGATGGCGGGAAATGAGAGCGATTACACTGCGGAGATCGAGGGAAGAGAGAGGGTTATGGTGGAAGATGCTTTCAGGAATACGGAGGTTCCGTCATGGAAGAATCAGATCACTGTTAGGGCTATTGTGACGAGCTTTATTCTTAGCATCGTCTTCAACTTCATTGTTTGTAAACTCAATCTTACCACTGGAGTTATTCCATCCCTTAATGTTGCTGCTGGACTTCTCGGATTCGCGATTCTGAAGGGGTACACTTCGATTCTCAGCCAGTTTGGTCTCATGAAACAGCCATTCACTCGACAGGAGAACACCGTGATTCAAACCTGCGTTGTCGCCTCCTCTGGGATCGCGTTTAGCAGTGGAACTGCTAGTTATCTTCTAGGAATGAGTGGCAAAATTGCTGTTCAAGCGGAAGAGGGAAACATTCCGATAAACATCAAGAAACTCTCTGTGGGTTGGATGATGGGTTTTCTCTTCGTTGTTAGCTTTGTTGGGTTATTCTCTATAGTGCCTCTTAGAAAGATGATGATTCTAAAATACAAATTGACTTATCCAAGTGGAACTGCGACTGCATACCTAATCAACAGCTTTCACACACCTAAAGGAGCGAAGCTTGCAAAGAGACAAGTTGCAGTCCTTTTCAAGAGCTTCTGTTTCAGCTTTTCATTTGCACTGTTCCAATGGTTCTTTGCTGCTGCTGATGGCTGTGGATTCGCCAGCTTCCCCACATTCGGCCTTCAAGCCTACGAAAAAAGGTTCTACTTTGATTTCTCGTCTACATACGTCGGTGTAGGAATGATCTGTCCATTTATGGTTAATATATCTCTACTTCTTGGAGCCATCATCTCGTGGGGTGTCATGTGGCCCCTGATCGAGGCAAGGAAAGGTGACTGGTACAGCGCTTCTCTATCTGCAACCAGCCTTCATGGTATTCAAGGCTATAGGGTTTTTACTGCCATTGCTATGATGCTTGGGGATGGTCTTTACCATGTATTCTTCATGCTCTTCCAAACATTCTACAGCTTAGCCCAGCAGAAACTTTCCCATGACCATGGTGATTCTTCTTTGGAGGCTACCGACTACGATGCTAAACAAAGAATTGATCACTTCACGAAAGACCAAATCCCGAACTGGGTAGCGATGCTCGGCTATGGTATACTTGCAGTGGTATCGATTATCGCAGTTCCTTTGATCTTCCATCAGTTGAAATGGTACCACGTTTTGGTTGCATATGCAATTGCTCCTGTCTTGGCCTTCTGTAATGCCTATGGCTGTGGGCTGACTGACTGGTCTCTTGCATCAAACTATGGTAAATTTGCCATCATTATCTTCAGTTCCTGGGTTGGCCTTGACAATGGAGGTGTTGTTGCTGGTCTTGCATCTTGTGGTGTCATGATGAGCATTGTTTCTACTGCTTCTGATCTCATGCAAGACTTCAAGACCGGGTACTTGACTCTCGCATCGCCCCGATCGATGTTTTTCAGCCAAGTTTGTGGTACTGCCATGGGCTGCTTCTTGTCACCACTCGTCTTTTGGTTCTTCTTCAAAGCTTACAACGTTGGAGATCCCGAAGGCTCCTACCCTGCACCCTATGGTCTAATGTACCGTGGCATTGCGCTTCTTGGCGTTGAGGGCGTCTCTTCCCTCCCCCGAAACTGCCTCACCCTTGCCATTTGCTTCTTTGTTGCTGCTATTGTCATTAACATCATTCGAGAATTTCTCCAAAAGTTGGACACTAGATACCGCGCCTACCGTTTCATCCCAAGTCCAATGTGTATGGCAATTCCGTTCTACCTGGGTGCTTACTTTGCCATTGACATGTGTGTTGGGAGCCTGATCCTCTTCTTGTGGCAGAGGAGGAACAAGATCAAGGCCAGTGAGTTTGCGCCCGCCGTGGCTTCGGGTCTCATCTGTGGTGAATCATTATGGAGTGTTCCAGCAGCCATATTGGCCCTGGCCGGTGTTAAGGCTCCTCTTTGCATGAAGTTCTTGAGTTCCTCTACCAATTCAAAGATCTCGGTAACTACGCCCACGGACATGGCGGCTGCAGCTACAACAAGCGTTGTGCCGCCGAATCGGCGGCGTGCGATAACCGCGCCGGAAGATAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGTATTAAGGATGATCTTCTCCGTGGAATATATGCATATGGTTTTGAAAAGCCCTCGGCCATTCAGCAAAGAGCCGTGCGGCCTATTATCGATGGTCGAGATGTCATTGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCTCCAGCAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATCAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTCGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGAACATTGCGTACCAGAGCCATTAAGTTGTTAGTTCTGGATGAATCCGATGAGATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAGCTTCAGGTTGTCTTGATTTCTGCTACTCTTCCTCATGAAATCCTGGAGATGACGAATAAGTTTATGACAGATCCCGTGAGGATCCTTGTGAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAGAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACCCAAGCCGTAATTTTCTGTAACACCAAGCGTAAGGTTGAATGGCTGACTGAGAAGATGCGCAGCAATAACTTCACAGTTTCACATATGCATGGAGACATGCCTCAAAAGGAAAGAGATGCAATTATGGGGGAGTTTCGATCGGGAACTACCCGTGTCCTAATCACTACTGATGTTTGGGCCCGAGGACTTGATGTTCAGCAGGTATCACTAGTGATAAACTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCTGGTCGGTTTGGGCGCAAGGTATGA 3183 46.59 MERNPSKQMAGNESDYTAEIEGRERVMVEDAFRNTEVPSWKNQITVRAIVTSFILSIVFNFIVCKLNLTTGVIPSLNVAAGLLGFAILKGYTSILSQFGLMKQPFTRQENTVIQTCVVASSGIAFSSGTASYLLGMSGKIAVQAEEGNIPINIKKLSVGWMMGFLFVVSFVGLFSIVPLRKMMILKYKLTYPSGTATAYLINSFHTPKGAKLAKRQVAVLFKSFCFSFSFALFQWFFAAADGCGFASFPTFGLQAYEKRFYFDFSSTYVGVGMICPFMVNISLLLGAIISWGVMWPLIEARKGDWYSASLSATSLHGIQGYRVFTAIAMMLGDGLYHVFFMLFQTFYSLAQQKLSHDHGDSSLEATDYDAKQRIDHFTKDQIPNWVAMLGYGILAVVSIIAVPLIFHQLKWYHVLVAYAIAPVLAFCNAYGCGLTDWSLASNYGKFAIIIFSSWVGLDNGGVVAGLASCGVMMSIVSTASDLMQDFKTGYLTLASPRSMFFSQVCGTAMGCFLSPLVFWFFFKAYNVGDPEGSYPAPYGLMYRGIALLGVEGVSSLPRNCLTLAICFFVAAIVINIIREFLQKLDTRYRAYRFIPSPMCMAIPFYLGAYFAIDMCVGSLILFLWQRRNKIKASEFAPAVASGLICGESLWSVPAAILALAGVKAPLCMKFLSSSTNSKISVTTPTDMAAAATTSVVPPNRRRAITAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIDGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKV 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1210950 1218355 + CmoCh01G002660.1 Cmo01g00266 373749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00266 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 791 1058 IPR027417 -
Cmo01g00266 1060 Pfam Helicase conserved C-terminal domain 949 1057 IPR001650 -
Cmo01g00266 1060 CDD SF2_C_DEAD 936 1059 - -
Cmo01g00266 1060 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 40 658 IPR004813 GO:0035673
Cmo01g00266 1060 Gene3D - 713 931 IPR027417 -
Cmo01g00266 1060 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 723 751 IPR014014 GO:0003724
Cmo01g00266 1060 SMART helicmild6 976 1057 IPR001650 -
Cmo01g00266 1060 Pfam DEAD/DEAH box helicase 748 910 IPR011545 GO:0003676|GO:0005524
Cmo01g00266 1060 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 754 924 IPR014001 -
Cmo01g00266 1060 SMART ultradead3 742 939 IPR014001 -
Cmo01g00266 1060 Gene3D - 932 1060 IPR027417 -
Cmo01g00266 1060 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 935 1060 IPR001650 -
Cmo01g00266 1060 Pfam OPT oligopeptide transporter protein 43 657 IPR004813 GO:0035673
Cmo01g00266 1060 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL7-RELATED 17 673 - -
Cmo01g00266 1060 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 17 673 IPR045035 GO:0035673
Cmo01g00266 1060 CDD DEADc_EIF4AIII_DDX48 725 925 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00266 Cmo-Chr1:1210950 Cmo04g03118 Cmo-Chr4:21643174 0 dispersed
Cmo14g01286 Cmo-Chr14:10771250 Cmo01g00266 Cmo-Chr1:1210950 3.41E-156 dispersed
Cmo17g00686 Cmo-Chr17:7014859 Cmo01g00266 Cmo-Chr1:1210950 2.17E-156 dispersed
Cmo01g00266 Cmo-Chr1:1210950 Cmo14g00989 Cmo-Chr14:5325450 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00266 - - csv:101222425 1181.78