Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00267 ATGTTCGCGCCTATCTGTGCCTTCCACACACAAATACTCTGGTTGGATGTCCAAAGGAATCATTGTGATTCATACTACAATTGGAATCTTTCTTGTACGTTGAATCAAATACTAGATAATAGGATTGAAGAACTATCGAATATAGAAATCTCTTTAAATGAACCTCGTTCTTCTCCGGCGGAGGCCGATTCGGCTGCCATGTCTCGCCAAGTTCCGATCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTGGGAGATGAGATCGGGAAAGGAGCATATGGGCGAGTTTACAAAGGTCTGGATTTGGAGAATGGGGATTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACGTTATCATGCAAGAGATTGACTTACTGAAGAATTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTCTGAAAACGAAGTCTCACCTTCACATAATACTCGAGTATGTGGAAAATGGATCATTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCACTTTATATTTCTCAGGTTTTGGAAGGCTTGGTTTATCTACATGAGCAAGGTGTAATTCATCGCGATATAAAGGGTGCGAACATTCTGACTACCAAAGAGGGTCTTGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCTGATGTTAATACGCATTCAGTTGTTGGAACACCTTACTGGATGGCTCCTGAGGTAATCGAAATGTCAGGAGTTTGTGCTGCTTCCGACATTTGGAGTGTTGGATGTACTGTGATTGAACTGCTTACATGCGTACCTCCATACTATGATCTGCAACCTATGCCCGCTCTTTTTCGCATTGTTCAGGACAAGCATCCTCCAATTCCGGATAGCCTATCACCAGACATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCTGATGCGAAAACTTTGCTTTCTCATCCTTGGGTACAGAATTGCCGACGGGCTTTGCATTCTTCTCTTCGTCATAGCGGCACATTGAGAAACACTCAACTAGATGGATCACCAGGAGAAGAAATTTCTAATGGAGACGATCAAAACTCTTGTGAAAGTCCTTCAGCGGAGAAAAATGAAATTGCTGGTTCTGATTTTAAAGCTGATTCAAGGAAGGACTTGGCATCAGATGTTGCCACTGATACGAGCAATTCCCAAAAACATTTTGCTTCAGGCCCTAATTTTGATGAGGAAGGAGAAGCCATAGAAGAAGATACTCTATTGGATCAAGTTCCAACCTTATCCATTCGTGATAATTTATCTCTTCTAACTGGTTCAGGCAGACTTGCAACCTCTGAGCCGACTGAGTTTCATGAATCTCATGGTAGAGCCCATGATGAAGTGATAATGAATGGAGGAGTGCCATCGGCAGAACTAAGAAAAGTTGCGTCTAGGAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAATAGCTCGTTTGGTTTTGGACCTGAAGGTCATGATAATTGTTTTCAAAAGGCTTCGAAGATGTCAATTGCTTCGGGAGGAAATGAGCTGAGTAAATTTAGCGACACTCCTGGAGATGCTTCCTTAGATGATTTATTTCAACCTTTAGATAAGCTCCCCGCTGATCGATCTTCTGAAGCATCAACATCACTATCTACCCCACAATCAAATATAGGTAATGTGCCAGTAAATAATGTCGGGAAAAATGACCTAGCCACAAAGTTGAGGGCTACGATTGCTCAGAAACAAATGGAAAATGAAATGGGACAAGTAAATGGTGGCGATGACCTGCTTCGACTAGTGATGGGTGTTTTAAATGATGATGTTGATATTGATGGTTTGGTTTTTGATGAGAAGATGCCCGGAGAAAACCTTTATCCTTTGCCGGCTGTTGAATTCGGCAGATTAGTTGGGTCATTGAGACCTGATGAACCTGAAGACGTAATTGTATCTGCCTGTCACAAATTGATTGCCATCTTCCATCATAGACCTGAGCAGAAAATTGTTTATGTTACACAGCATGGTCTACTCCCATTGACGGAGTTGCTTGAAGTTCCTAAAACTCGTATTACATGTTCAGTGCTCCAGCTTATAAATCAGATAGTTAAGGATAACGATGACTTCCAAGAAAATGCTTGTCTTGTTGGTCTAATTCCTCTGGTAATGGGATTTGCGGTTCCTGACCGGCCCCGAGAAGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTTGCATGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGATTATGCAAAGTACAGGGAAATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTTCGAAATAGTTTCTGTCGTATATCAGCAAAAAGTGGAATTCTGCTTAGGCTTATTAACACCCTCTACAGCTTAAATGAGGCAACTCGCTTAGCTTCTATAACGGTGGGGGCTGGAAATCCATTTGATGGTTTTCAACGGTCACGATCAGGTCAACTAGATTCTAGCCACTGTATATTCAGTCAGTATGAGGCCTCATTTCCTGTGCCTGATCAGCCTGATCTTTTGAAGGTCAGGCATGGAATAGTTGATCATCACCTGTCTGCTGGAACACCAGAACCTTCAAGGGCTTCATCTTCACATTCTCAAAGATCAGATGCGAATCAATCTGATCACCGACACTTTTCCACAGATCCTGGTAGGCTGTCTAGCAATGCCACAAATGAAGCGTTGGGGACTTCTAAACCACCGGAGCTAGCATCTTTAGAAAAAGTTGTAAATTTAGCAACCAAAGAACCGTCGGGCTTTGTTTCTAAAGAACATGAAAATGTAGATAGATGGAGAATTGAGCAGATGGTCAATTCAAACAGGACTTCCACAGATAGACCTCCAAAATTTCTGGAACCTGCATCTAATGGATTTCCTACAGCCTCGATGGTTACGCCGCAAGAGCAAGTTCGGCCCCTTCTAAGTCTATTGGACAAAGAACCCCCTTCTCGACACTTGTCTGGTCAGCTTGAGTACATGCACCACCTTTCTGGATTGGAGAGACATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATGAATGGGGAGCTTGATTTCTTAATGGCAGAATTCGCTGAGGTTTCTCAACGTGGAAAAGAAAATGGAAATCTTGACCCCACTTCTAAGGTTTCCCTTAAAACGGTGGGAAGGAAGGTAGAACCCCTGGTGTCCAATGAGGGAGCTCCATCCACTTCTGGAATTGCTTCACAGACAGCATCAGGGGTGCTTTCAGGTTCGGGTGTATTAAATGCTATACCGGGGAGTTCAACATCCTCTGGACTTCTCTCGCACATGGTTTCAACTATGAACGCTGATGTTGCAAGGGAATACCTAGCGAAGGTGTCTGATCTTCTGCTTGAGTTTGCTCAGGCAGATACAACTGTGAAGTCATATATGTGCAGCCATAGCTTGCTCAATCGCCTTTTCCAGATGTTCAATAGGGTAGAGCCCTCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACAGATCCAAACTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCAAACCTTGAACTCAAAGAAGGGTCTCTAGTATCGCAAATACATACTGAGGTCCTCAGCACACTATTCAATTTGTGCAAGATAAATAAGAGGAGGCAAGAATGTGCAATTGAAAATGGAATTATTCCACACTTGATGCATTTTATTATGTCAGACTCTCCTCTTAAAAAAGATGCATTGCCTCTACTGTGCGATATGGCCCATGCATCTCGTAATTCTAGGGAGCAGTTAAGAGCCCACGGTGGCTTAGATGTATATTTAAGCCTACTTGAGGATGAGATTTGGTCTGTCACGGCATTGGACTCCATTGCTGTGTGCTTAGCTCATGACAATGACAACCGAAAAGTTGAACAGGCTTTGCTGAAAAAGGAAGCAATTAAAAAATTGGTGAAGTTTTTCCAGTGCTGTCCGGAACAACATTTTGTGCATATATTGGAACCGTTCTTGAAAATCATCACAAAATCTTCCCGAATCAATACAACACTGGCTGTCAATGGATTGACCCCATTGCTTATAGCAAGGCTGGACCATCAGGATGCGATTGCTCGGCTTAATCTACTTAAACTGATCAAGGCTGTGTATGAGCATCATCCACGACCAAAGCAATTGATTGTGGAAAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGAGATGGACAACGGTCTGGTGGTCAGGTATTGGTGAAACAAATGGCCACATCTCTGCTAAAAGCACTTCACATCAATACAGTTTTGTAA 4461 42.08 MFAPICAFHTQILWLDVQRNHCDSYYNWNLSCTLNQILDNRIEELSNIEISLNEPRSSPAEADSAAMSRQVPITAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNVIMQEIDLLKNLNHKNIVKYLGSLKTKSHLHIILEYVENGSFANIIKPNKFGPFPESLVALYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWVQNCRRALHSSLRHSGTLRNTQLDGSPGEEISNGDDQNSCESPSAEKNEIAGSDFKADSRKDLASDVATDTSNSQKHFASGPNFDEEGEAIEEDTLLDQVPTLSIRDNLSLLTGSGRLATSEPTEFHESHGRAHDEVIMNGGVPSAELRKVASRKHGEKETSTTSGNSSFGFGPEGHDNCFQKASKMSIASGGNELSKFSDTPGDASLDDLFQPLDKLPADRSSEASTSLSTPQSNIGNVPVNNVGKNDLATKLRATIAQKQMENEMGQVNGGDDLLRLVMGVLNDDVDIDGLVFDEKMPGENLYPLPAVEFGRLVGSLRPDEPEDVIVSACHKLIAIFHHRPEQKIVYVTQHGLLPLTELLEVPKTRITCSVLQLINQIVKDNDDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYREMVHLAIDGMWQIFKLQRSTLRNSFCRISAKSGILLRLINTLYSLNEATRLASITVGAGNPFDGFQRSRSGQLDSSHCIFSQYEASFPVPDQPDLLKVRHGIVDHHLSAGTPEPSRASSSHSQRSDANQSDHRHFSTDPGRLSSNATNEALGTSKPPELASLEKVVNLATKEPSGFVSKEHENVDRWRIEQMVNSNRTSTDRPPKFLEPASNGFPTASMVTPQEQVRPLLSLLDKEPPSRHLSGQLEYMHHLSGLERHETIMPLLHASNEKKMNGELDFLMAEFAEVSQRGKENGNLDPTSKVSLKTVGRKVEPLVSNEGAPSTSGIASQTASGVLSGSGVLNAIPGSSTSSGLLSHMVSTMNADVAREYLAKVSDLLLEFAQADTTVKSYMCSHSLLNRLFQMFNRVEPSILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSTLFNLCKINKRRQECAIENGIIPHLMHFIMSDSPLKKDALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDEIWSVTALDSIAVCLAHDNDNRKVEQALLKKEAIKKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1218983 1236792 - CmoCh01G002670.1 Cmo01g00267 373750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00267 1486 Gene3D - 1141 1481 IPR011989 -
Cmo01g00267 1486 Pfam Protein kinase domain 87 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00267 1486 SUPERFAMILY ARM repeat 653 847 IPR016024 -
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 900 952 - -
Cmo01g00267 1486 Gene3D Transferase(Phosphotransferase) domain 1 83 373 - -
Cmo01g00267 1486 SMART serkin_6 86 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00267 1486 Gene3D - 648 850 IPR011989 -
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 354 385 - -
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 933 948 - -
Cmo01g00267 1486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Cmo01g00267 1486 CDD STKc_Cdc7_like 85 340 - -
Cmo01g00267 1486 SMART arm_5 1266 1305 IPR000225 GO:0005515
Cmo01g00267 1486 SMART arm_5 1220 1264 IPR000225 GO:0005515
Cmo01g00267 1486 SMART arm_5 766 809 IPR000225 GO:0005515
Cmo01g00267 1486 SMART arm_5 681 721 IPR000225 GO:0005515
Cmo01g00267 1486 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 68 1442 - -
Cmo01g00267 1486 ProSiteProfiles Protein kinase domain profile. 86 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00267 1486 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 405 419 - -
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 490 515 - -
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 561 583 - -
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 354 424 - -
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 390 404 - -
Cmo01g00267 1486 PANTHER MAP KINASE KINASE KINASE 68 1442 - -
Cmo01g00267 1486 SUPERFAMILY ARM repeat 1163 1460 IPR016024 -
Cmo01g00267 1486 MobiDBLite consensus disorder prediction 559 583 - -
Cmo01g00267 1486 SUPERFAMILY Protein kinase-like (PK-like) 83 341 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00267 Cmo-Chr1:1218983 Cmo17g00245 Cmo-Chr17:1450940 1.38E-74 dispersed
Cmo14g01692 Cmo-Chr14:13276907 Cmo01g00267 Cmo-Chr1:1218983 1.39E-35 dispersed
Cmo18g01122 Cmo-Chr18:11582886 Cmo01g00267 Cmo-Chr1:1218983 1.92E-49 dispersed
Cmo01g00267 Cmo-Chr1:1218983 Cmo14g00988 Cmo-Chr14:5299175 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74018 PF00069 Pkinase 2.60E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00267 - - csv:101206469 2500.32