Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00271 ATGAGCTGCTTTCGCTGCTGTGAGGAAGATGAAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGCAAAAAACACTTCAGGAAACAATGGAGGTTATCATAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTCAAAATGCAACCAATATTAGTGCCTAGCATACCCCTCAATGAACTATCGGAAGTAACAGACAACTTTGGAAATGATGCTTTAATTGGAGAGGGTTCATATGGAAGAGTATACTATGGGTTGCTTAAAAGCGGGCAGCCTGCTGCGATCAAGAAGTTAGATGCAAGCAAACAGCCTGATGACGAGTTTCTAGCCCAGGTCTCCATGGTCTCAAGGTTGAAGAACGAAAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGGAGTTCCCGCATACTAGCATACGAGTATGCTTCTAATGGATCACTTCATGATATCCTTCATGGAAGAAAAGGTGTGAAAGGAGCCCAGCCTGGTCCCGTTCTATCATGGGCTCAACGTGTGAAAATTGCTGTGGGGGCAGCTAGAGGACTTGAGTATTTGCATGAAAAGGCCGAGTCCCACATTATCCATCGTGATATTAAGTCCAGCAATGTACTTCTCTTTGATAATGATGTTGCTAAAATTGCTGACTTTGATTTATCCAATCAAGCTCCTGATATGGCAGCACGTCTTCATTCTACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCTGAATATGCTATGACTGGTCAGTTGAATGCCAAGAGTGATGTATACAGCTTCGGTGTAGTCTTGCTTGAACTTCTGACCGGGAGAAAACCTGTAGATCCTACGCTACCACGAGGACAACAAAGTCTAGTTACTTGGGCTGCACCAAAACTGAGTGAAGATAAAGTTAGGCAGTGTGTCGATGGAAGGCTTGGCGGAGACTACCCCCCAAAGGCAGTAGCAAAGTTGGCAGCTGTTGCAGCCTTGTGTGTGCAATATGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTTCAGCATCTATTAAATGCCCGACCTGTGCCTTCTTCTGGTGATGCATCAAACTCGTGA 1092 44.96 MSCFRCCEEDEIQKAADNGGMYAAKNTSGNNGGYHKPEAAPAVTQAVKMQPILVPSIPLNELSEVTDNFGNDALIGEGSYGRVYYGLLKSGQPAAIKKLDASKQPDDEFLAQVSMVSRLKNENFVQLLGYCIDGSSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLLFDNDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWAAPKLSEDKVRQCVDGRLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPVPSSGDASNS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1260939 1264856 - CmoCh01G002710.1 Cmo01g00271 373754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00271 363 Gene3D Transferase(Phosphotransferase) domain 1 144 357 - -
Cmo01g00271 363 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00271 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Cmo01g00271 363 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Cmo01g00271 363 Gene3D Phosphorylase Kinase; domain 1 34 143 - -
Cmo01g00271 363 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cmo01g00271 363 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
Cmo01g00271 363 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00271 363 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Cmo01g00271 363 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00271 Cmo08g00489 CCT
Cmo01g00271 Cmo14g00983 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00271 Cmo-Chr1:1260939 Cmo08g00086 Cmo-Chr8:442225 1.47E-174 dispersed
Cmo01g00271 Cmo-Chr1:1260939 Cmo14g00983 Cmo-Chr14:5263303 4.14E-14 wgd
Cmo01g00271 Cmo-Chr1:1260939 Cmo17g00968 Cmo-Chr17:8483250 1.63E-12 wgd
Cmo01g00271 Cmo-Chr1:1260939 Cmo08g00489 Cmo-Chr8:3011861 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74019 PF07714 PK_Tyr_Ser-Thr 4.60E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00271 K13436 - csv:101223136 678.322