Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00273 ATGGAGACTGGTTATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGGTCTATGGATTTGAGGGCTGCTGTTGGGAAGAAGAGCCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTTTTTATTGCTAGGCCTTTAAATTTGGTGGAGTCTGATCATTTAGGTAGCCAAGTTTTTCCAATTGTCTCTGGGATTCCTTTGACCGGTGGCTCGTCGAACAGTTCGTCGTCGTGTTCTGATGAAGCTAATACGGGGATCGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGATAATGTTATGGAAGGTGAGAATCTTAATGATGAAGCTCGTAGTTTGAGTTTGAAGGTTGGTGGAAATGGTTGTCAAATTGTTGAGAAAGAAGCAGGGAATTGGGAAGGAAGTAGTGGCAAGAAGACTAAACTGACCGGAGGAAACTCGAGTCGTGCGGTTTGCCAGGTAGAGGACTGTGGAGCTGATCTTAGCAATGCTAGAGATTATCACAGAAGACATAAAGTCTGCGAAATGCATTCGAAGGCGAGTAATGCGCTCGTTGCTAACGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAGGAGTTCGATGAAGGAAAACGGAGTTGTCGAAGGCGTTTGGCTGGCCATAATAAGCGTAGAAGAAAGAACAATCCTGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTCTAATGCGAATACTTGCGAATTTGCACTACAGAAAAGAGTCAAAGAATGAAAGAAAGGATACAGCAAGATCAGTAAATAGGTGCAGGAGAGCAGCAGATACCAATGGATCAAACAAGACCACAGACCAAGATCTTCTTTCGAATCTTATACGGATCCTTGCCTGTCAATCCGGTGAGCACGGCAGTAAAAACCGATCTGGGATTCTGCATGAACCTCAGAATTTGCTGAACGGGGCTAAATCCGATCTAGTACCTTTGAGATCTTCTAAACAACCTGACACGATACCGATATCCGAGACACCAATACAAGCAACTGTTCGAGGTGGAGATACACCAGCTATATCTTCTGTAAAACCAAGCACTTCAAACAGCCCTCCCGCGTATTCAGAAATCAGGGACAATACGGTTGGACAGTGCAAAATGATGAACTTTGATTTGAACGATGTTTATGTCGACTCGGACGATGGCATGGAAGACACTGAGAGACAAGCACGCCCAGTAGTGCATATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGTACAGATCGGATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTACGAGCTCAGGTTCTCAATTGGTTATCACATAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGACAGACTGAGGCTACATGGAATGATCTTTGCCATGACCTCGGTACCAGTTTGAATAGGCTTCTTGATGTTTCCGATGAAGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTTGTTTATCATGGTCTGATTATCTCTAGTTTAAGAGGAGCTTTAATTGTTGTCTTTTGTTTAACATCGAGTTCATTTTTTATGCTGCAGGTCGTAGTCGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTCGTATCACAAGCGTAAACCCCGTTGCCGTTTCTTTATCTAAGAAGGCTACATTTTCGGTTAAAGGAATAAACTTAACCCGATCGACAACTAGGTTACTGTGTGCCATTGAAGGGACATATCTTACTCAGGAAGCTTCAGATGATTCAACAGAAAGTGATGATAACTCGAACGCACGAGACGACAGCCAATGCGTAACCTTTTCTTGCTCGATTCCTGTCGTCTGTGGAAGGGGATTCATCGAGGTGCACCAAGAACTTCGACCGATCGAACTTCTTTTTGTGGGGGTGGGTTGGGATAATATCCAGGCTGAAGATGATGGTTTGAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAAGAGGATGTTTGTACAGAGATCTGCACACTTCAAAGTGCTTTAGAATTTACTGAAATATGTTCAAATTCTGGGGAAGCTACGGAGCTGGAAGGAAGGAGTCATGCAATGGAGTTCATCCATGAAATTGGTTGGCTGTTTCATAGAAATCACTTGAAGTCTAGATTAGGTAACTTGGATCCTAACGAAAATGTCTTTTCGCTGTCACGGTTCAAGTGGCTCGTCGAGTTCTCTATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTCTTAGATGTCCTTCTTGATGGGACTGTGGACTTTGGAGATCACCCGTCGTTGAATTTTGCATTGACCGAAATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTCGGTCGTTGGTCGAGCTCCTTTTGGGTTACTCTTCAAAAGTGATGGACTCATCAAGTTCTGATGGATCGACCGGTAGCTTCCTGTTTAGACCTGATGTCGTTGGCCCAGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCATGGATGTTCTTGATGCGTTAACGAATGATCCGGGAATGGACAATGAGACTGAAGAAATGACTGGGTTATTACAGGTAGGAGTTGAGGCTTGGAAGAGTGCTCGAGACGTCACAGGCTCGACACCTGAGGATTACGCTCGTTTGCGTGGCCATTACTCGTATATTCGTCTCGTCCAGAGGAAAATCAACAAGAGATCTTCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTGTCTCAGATGGTAGCTGGAACCAGAAGCAGAACACTGATGTGATGACCTCCTCCAGGTTTGAGATTGGTAGGACAAAACTAAATCATTCTCAGCAGGATTGCAGCCGTTGTGTTATGAAACCGAGCTGTTTCGGAACGTCGTCTAAAGCGTCTCTGGTCTACCGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTGTGTGTGTGTGTGGCGCTCTTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCGGCCCGTTCCGATGGGAACTACTAGAATACGGTACTAGTTAG 3231 44.82 METGYGGEACQLYGMGSMDLRAAVGKKSLEWDLNDWKWDGDLFIARPLNLVESDHLGSQVFPIVSGIPLTGGSSNSSSSCSDEANTGIEKGKREVEKRRRDNVMEGENLNDEARSLSLKVGGNGCQIVEKEAGNWEGSSGKKTKLTGGNSSRAVCQVEDCGADLSNARDYHRRHKVCEMHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKNNPDNVVNGNSPPDEQTSSYLLLTLMRILANLHYRKESKNERKDTARSVNRCRRAADTNGSNKTTDQDLLSNLIRILACQSGEHGSKNRSGILHEPQNLLNGAKSDLVPLRSSKQPDTIPISETPIQATVRGGDTPAISSVKPSTSNSPPAYSEIRDNTVGQCKMMNFDLNDVYVDSDDGMEDTERQARPVVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLNWLSHSPTEIESYIRPGCVVLTIYLRQTEATWNDLCHDLGTSLNRLLDVSDEAFWRTGWVYVRVQHQIAFVYHGLIISSLRGALIVVFCLTSSSFFMLQVVVDTSLPLRNKNYCRITSVNPVAVSLSKKATFSVKGINLTRSTTRLLCAIEGTYLTQEASDDSTESDDNSNARDDSQCVTFSCSIPVVCGRGFIEVHQELRPIELLFVGVGWDNIQAEDDGLSSSSFPFIVAEEDVCTEICTLQSALEFTEICSNSGEATELEGRSHAMEFIHEIGWLFHRNHLKSRLGNLDPNENVFSLSRFKWLVEFSMDHDWCAVVKKLLDVLLDGTVDFGDHPSLNFALTEMSLLHRAVRKNSRSLVELLLGYSSKVMDSSSSDGSTGSFLFRPDVVGPAGLTPLHIAAGKDDSMDVLDALTNDPGMDNETEEMTGLLQVGVEAWKSARDVTGSTPEDYARLRGHYSYIRLVQRKINKRSSAGHVVLDIPSTVSDGSWNQKQNTDVMTSSRFEIGRTKLNHSQQDCSRCVMKPSCFGTSSKASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFGPFRWELLEYGTS 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1270820 1281928 + CmoCh01G002730.1 Cmo01g00273 373756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00273 1076 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677|GO:0005634
Cmo01g00273 1076 Gene3D - 808 971 IPR036770 -
Cmo01g00273 1076 Gene3D - 146 216 IPR036893 GO:0003677|GO:0005634
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 219 243 - -
Cmo01g00273 1076 Pfam SBP domain 155 228 IPR004333 GO:0003677
Cmo01g00273 1076 SUPERFAMILY Ankyrin repeat 795 971 IPR036770 -
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 71 99 - -
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 366 381 - -
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 280 294 - -
Cmo01g00273 1076 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1075 IPR044817 GO:0003677
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 71 85 - -
Cmo01g00273 1076 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Cmo01g00273 1076 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1075 - -
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 265 294 - -
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 357 381 - -
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 265 279 - -
Cmo01g00273 1076 MobiDBLite consensus disorder prediction 430 465 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00273 Cmo14g00981 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00273 Cmo-Chr1:1270820 Cmo01g02108 Cmo-Chr1:14584798 3.77E-39 dispersed
Cmo01g00273 Cmo-Chr1:1270820 Cmo14g00981 Cmo-Chr14:5243293 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9012 PF03110 SBP 2.10E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00273 - - csv:101203103 1601.65