Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00278 ATGGAGGAAAATTTCGTTCCATTTCGTGGAATCAAGAAGGACCTTAAAGGGAGGTTGCTCTGCTACAAACAAGACTGGACTGGTGGATTCAGAGCTGGATATAGGATTTTGGCTCCCACTACTTACATATTCTTTGCCTCTGCTATTCCTGTCATTTCATTTGGTGAACAATTGGAGAGAAGTACTGATGGGGTGTTGACTGCTGTTCAAACCTTAGCCTCCACAGCTCTTTGTGGCATCATTCACTCCATTGTTGGAGGTCAACCTTTGTTAATCTTGGGAGTAGCTGAGCCTACTGTTATTATGTACACCTTCATGTTCAATTTCGCGAAGGAACGACCCGAGTTGGGTCGGAATCTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATATTAGGAGCATGTTCCATCATCAATCGGTTCACTCGTCTCGCCGGTGAATTGTTCGGTTTGCTTATCGCGATGCTTTTCATGCAGGAAGCGGTGAAAGGACTTGTGGATGAGTTTCGTATCCCGGAACGAGAAAATCCGAAGTTGATCGAGTTTATACCTTCGTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTGTCGTTTGGCCTTCTACTCACTGCGTTAAGGAGTCGAAAAGCTCGGTCGTGGCGATATGGATCTGGTTGGCTCAGAAGCTTGATAGCAGACTATGGAGTGCCGCTCATGGTTCTTGTTTGGACAGGTATATCCTTCATTTCGTCGAAAAATGTCCCACAAGGTATCCCGAGACGACTCTTCAGCCCGAATCCATGGTCTCCCGGTGCGTACGAGAATTGGACTGTTATTAAGGATATGCTCGACGTTCCAGTCCTTTATATCTGTGGAGCGTTCATCCCGGCTACGATGATTGCGGTGCTTTACTATTTCGACCATAGTGTTGCATCTCAACTTGCTCAGCAGAAAGAGTTTAATTTGAGGAAGCCATCTTCTTACCATTATGATTTACTTCTCTTGGGATTTTTGACCTTAATATGTGGCCTTCTTGGAATTCCTCCTTCTAATGGAGTCATCCCACAATCTCCGATGCATACGAAGAGCCTAGCTACTCTCAAACACCAGTTGCTGCGGAATAAACTTGTAAAAACGACACGGTGTAGTATGAGAAAGAATGCTAGCTTGGGACAATTATATGGAAGTATGCAAGAAGCATATCATCAAATGCAGACCCCCCTGATCTACCAACAGCCCGCATCTCGTGGACTGAATGAGCTAAAAGAAACAACGATTCTCGCAGCTTCTAGTATGGGCAGTTTCGATGCTCCGGTCGATGAGACGGTATTCGACATTGAAAAGGAAATCGATGATCTATTGCCTGTCGAGGTGAAAGAACAGCGTGTCAGTAATTTGCTTCAAGCTGCAATGGTGGGAGGATGCGTTGCAGCCATGCCGGTCCTGAAAAAGATCCCGACCTCGGTTCTATGGGGTTACTTCGCGTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTCTTCACTGCACCCAGTAGAAGATACAAAGTTCTTGAGGATTACCATGCGACATTCGTCGAAACCGTGCCATTCAAATCCATTGTACTTTTTACCATTTTCCAAATTGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCGATCGCCGGGGTCATGTTTCCTTTGATGATCATGCTCCTCGTCCCGGTGCGACAATACCTTCTTCCCAAGTTCTTCAAAGGTGCACATCTCCAAGATCTCGATGCAGCTGAGTACGAAGAAGCATCGGCTTTACCGTTCAACCTTGCTACGGAAGCCGAGCTGGGAGCTGGAGCCTCATTTGGTGGCGATGGGGAGATTTTAGACGATGTTATCACTCGAAGCCGTGGCGAATTTAGGCATATTAGTAGTCCTAAGATCACAAGCTCCATGGCATCACCAAGATGTGAGCGAAAGAGTTTTGAGAGCCCTCGGGTGAGCGAGCTAAGAGGAGTGCAGAGTCCTCGAGCCGGGGGACGAGGGACACCATCGTCCGGTCTGGGAAAGAGCCCTCTTAAGAACACAGCATCAAAGTAG 2112 46.69 MEENFVPFRGIKKDLKGRLLCYKQDWTGGFRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQEAVKGLVDEFRIPERENPKLIEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGISFISSKNVPQGIPRRLFSPNPWSPGAYENWTVIKDMLDVPVLYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVKTTRCSMRKNASLGQLYGSMQEAYHQMQTPLIYQQPASRGLNELKETTILAASSMGSFDAPVDETVFDIEKEIDDLLPVEVKEQRVSNLLQAAMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKSIVLFTIFQIVYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEASALPFNLATEAELGAGASFGGDGEILDDVITRSRGEFRHISSPKITSSMASPRCERKSFESPRVSELRGVQSPRAGGRGTPSSGLGKSPLKNTASK 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1310631 1314493 - CmoCh01G002780.1 Cmo01g00278 373761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00278 703 Gene3D Helical hairpin bin 18 60 - -
Cmo01g00278 703 PANTHER BORON TRANSPORTER 2-RELATED 1 687 - -
Cmo01g00278 703 PANTHER ANION EXCHANGE PROTEIN 1 687 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cmo01g00278 703 MobiDBLite consensus disorder prediction 653 703 - -
Cmo01g00278 703 Pfam HCO3- transporter family 7 179 IPR011531 GO:0006820|GO:0016021
Cmo01g00278 703 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Cmo01g00278 703 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00278 Cmo14g00972 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00278 Cmo-Chr1:1310631 Cmo13g00915 Cmo-Chr13:8095554 0 dispersed
Cmo01g00278 Cmo-Chr1:1310631 Cmo14g00972 Cmo-Chr14:5192107 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00278 K24194 - csv:101205388 1299.26