Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00287 ATGGAGAAGAAGAAGGAAGAGATTATGAACTCCGGCGGCGGCAGCGGCGGCGGTGGTGGGTATTTGCCGTTTTCCGACAGTACGACAGGCGGCAGTTTATTTGATTTTTGTGATGGTGAAAAATTGTCTGTTGGGTTCATGGAGCTGCTTGGTGTTAAAAATGGTGAATTTAAGGATTATTGTTCGGAGGTTGTGAACCCTCCGGATACCCCTAATTCCTCCTCCATCTCCTCCCCCTCTACCGACGCGGCCGATCACGAGGCCGACGGTGAAAATCCTCAACAACAACACAAGCCATGTAATAATCCTTTGAAGGTGAAGAGGAAGAAGCAAAAGAGAGAGAAGGGGCAAAGATTTGCTTTCATGACGAAGAGTGAGGTCGATCATCTCGAAGATGGGTATCGATGGAGGAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCTAGGAGCTATTATCGATGCACCAATGCATCTTGTAACGTAAAGAAGAGAGTTGAACGATCTTTTGTTGATCCAACTGTCGTGGTCACCACCTACGAAGGCCAACACACTCACCCAAGTCCGATTCTCACTCGGTCCGCCTTAGCCATCGCCACTCCGCCTCCGCCTTCCATTGACATGTTGGGAGGAGGGTGTGTCGGTGTTGCACCCATACCATGGCTCAAAGCTAGCAACAACACTCATGCAATATCTCATCAATACATACAAAACTCGACCTTCTTCACTCCCCAACATTCGACCGTTGATTACAACCGCAGCCTCATCGGAGCAGCGAACGTTGCCGGGCTTCTTCAGGACAAAAGATTGTGCAACCCAAACCCTGCTTTTCTTGCCGACCATGGGCTGCTTCAAGATGTTGTTCCTCCTCACATGCTCAAACAGGAGTAA 894 49.11 MEKKKEEIMNSGGGSGGGGGYLPFSDSTTGGSLFDFCDGEKLSVGFMELLGVKNGEFKDYCSEVVNPPDTPNSSSISSPSTDAADHEADGENPQQQHKPCNNPLKVKRKKQKREKGQRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNASCNVKKRVERSFVDPTVVVTTYEGQHTHPSPILTRSALAIATPPPPSIDMLGGGCVGVAPIPWLKASNNTHAISHQYIQNSTFFTPQHSTVDYNRSLIGAANVAGLLQDKRLCNPNPAFLADHGLLQDVVPPHMLKQE 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1364234 1366203 - CmoCh01G002870.1 Cmo01g00287 373770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00287 297 MobiDBLite consensus disorder prediction 64 117 - -
Cmo01g00287 297 MobiDBLite consensus disorder prediction 66 82 - -
Cmo01g00287 297 MobiDBLite consensus disorder prediction 1 24 - -
Cmo01g00287 297 Gene3D WRKY domain 114 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g00287 297 SUPERFAMILY WRKY DNA-binding domain 122 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g00287 297 SMART WRKY_cls 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g00287 297 Pfam WRKY DNA -binding domain 131 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g00287 297 PANTHER WRKY TRANSCRIPTION FACTOR 61 289 - -
Cmo01g00287 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 289 IPR044810 GO:0003700
Cmo01g00287 297 ProSiteProfiles WRKY domain profile. 125 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00287 Cmo14g00962 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00287 Cmo-Chr1:1364234 Cmo12g00074 Cmo-Chr12:398380 9.85E-46 dispersed
Cmo01g00287 Cmo-Chr1:1364234 Cmo14g00962 Cmo-Chr14:5136664 2.84E-89 wgd
Cmo01g00287 Cmo-Chr1:1364234 Cmo17g00367 Cmo-Chr17:2255107 1.22E-55 wgd
Cmo01g00287 Cmo-Chr1:1364234 Cmo08g00472 Cmo-Chr8:2911698 5.84E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9014 PF03106 WRKY 5.00E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00287 - - cmo:103489912 347.051