Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00292 ATGTCGGTGCCTGCGGCTTCCGTCGCTGCAGGTATATTGAAACAGGTTGCTTGCTCGTTTCCAAAACAGTTCATTTTATTGTGGTTTCTGATTCCCGTCACCAATGCCTACGTACCCGATATATCAGCAGCACCTTTGGTTGCACCTGCTATCCACAATATGCCTTTTCCTGCCAAATTGCCTCCTCACCAACACCACCGTGGAAAAAATATGTCACCGCAGAGTGTGTCAGCAGCTGGACTAGCACCAGCATCTCCTCCTTACTATGGGCCTCTTATCACTTCTGGTCACTCACCCACGAGTTCAAGTTTTTCAAAACCATTGATGAAGAGTGGATCGGCTCCTCCTGATGGTAGGCTTGAAAACATTGCTCCCATACAGTCCAGTGCTGGAGCTATTCCCCTTGGATTACCTCAGCCACCACTTTCTCCTAATGCAGCAGCAGACTGTTGCAAACCTGACATGGTGCTGAAACGAGGAAGTGGCAATGACTGCCACTGTGTCTATCCCATAAAAATTGATCTCCTCCTCTTGAATGTATCACAGACTCCTAATTGGAAACTTTTTCTCGAAGAGTTAGCTTCCGAACTAGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTAATTAGTTTATCAAGGTTAAATATCTCAATGGACATCACTCCACATGCTGGGATCAGCTTTTCTGCGGTTGATGCATCGACGATAAACTCTTCACTTACAATGCACAAGGTTCATCTAGACCCTACACTGGTTGGTGATTACAATCTTCTCAATCTCACCTGGTTTAAGCCTCCTCCTCCTTCTCAAGCTCCTACAGCTTCGGCATCACCTGTAGCAGCTCCTGTATATCATTTTCCAGCCTCAACATCTCTGAGTCCTCCTAGTAAAGGACACCATTCGAATCTGACCCTTATTCTTGGGATCGGTGCTGGCTTTTTTTTCATTGCCATTCTATTTGTGTTGATAATTTGTCTATACACATCTCGTCATGGGAAGACTGAAGCACCTCCTTTAGTAGCTGAAAAACCAAGGGTTGAAGACAAAGTGCCTGGGGTAGGATCTTTCCCTCATCCATCAAGTATGAGGTTTCTAACTTACGAGGAGCTTAAAGAAGCAACTAATAACTTCCAAGCAGAAAGCATATTGGGGGAGGGTGGTTTTGGCAGGGTTTTTAAGGGTGTCTTAAGTGACGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGTGATAAGGAGTTTTTGGTTGAGGTCGAGATGCTTAGTCGGTTGCATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGATTCTTCACAGAACCTGCTATGCTATGAACTTGTTCCCAATGGAAGCTTGGAGGCCTGGCTCCATGGGCCTCTAGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATCGCGCTTGATGCCGCTCGAGGACTTGCTTACCTTCATGAAGACTCGCAACCGTGTGTTATCCACAGAGACTTTAAGGCATCAAATATACTGCTTGAGAACAACTTCCATGCCAAAGTTGCTGACTTTGGTCTTGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGTACATTTGGGTATGTCGCCCCCGAATATGCAATGACTGGTCATTTACTCGTTAAAAGTGATGTTTATAGCTATGGAGTTGTTCTTCTTGAGTTGCTCACCGGAAGAAAACCTGTCGATATGTCACAAACATCAGGGCAAGAGAACCTTGTCACATGGGCTAGGCCAATTTTGAGAGATAAGGATCGGTTGGAAGAACTTGCTGATCCACGACTCGGAGGAAAGTATCCGATGGAAGATTTCGTGCGGGTGTGTACCATTGCTGCAGCCTGTGTTGCTTCAGAGGCTGGCCAACGCCCAACTATGGGCGAAGTTGTACAGTCTCTTAAAATGGTCCAGCGGACTACAGAATACCAAGACACCGTGGTACCATCCTCCAACAACCAAACCAATGTCAAACAATTCTCCACAACATTCGAGTCCGATGGATCCTCGTCGATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGCGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTCCACGAGGGACGATGA 2175 45.7 MSVPAASVAAGILKQVACSFPKQFILLWFLIPVTNAYVPDISAAPLVAPAIHNMPFPAKLPPHQHHRGKNMSPQSVSAAGLAPASPPYYGPLITSGHSPTSSSFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPLGLPQPPLSPNAAADCCKPDMVLKRGSGNDCHCVYPIKIDLLLLNVSQTPNWKLFLEELASELGLRVSQIELINFYVISLSRLNISMDITPHAGISFSAVDASTINSSLTMHKVHLDPTLVGDYNLLNLTWFKPPPPSQAPTASASPVAAPVYHFPASTSLSPPSKGHHSNLTLILGIGAGFFFIAILFVLIICLYTSRHGKTEAPPLVAEKPRVEDKVPGVGSFPHPSSMRFLTYEELKEATNNFQAESILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQTSGQENLVTWARPILRDKDRLEELADPRLGGKYPMEDFVRVCTIAAACVASEAGQRPTMGEVVQSLKMVQRTTEYQDTVVPSSNNQTNVKQFSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1389479 1394170 + CmoCh01G002920.1 Cmo01g00292 373775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00292 724 ProSiteProfiles Protein kinase domain profile. 380 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00292 724 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Cmo01g00292 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Cmo01g00292 724 CDD STKc_IRAK 386 656 - -
Cmo01g00292 724 Pfam Protein kinase domain 381 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00292 724 Gene3D Transferase(Phosphotransferase) domain 1 458 682 - -
Cmo01g00292 724 PANTHER OS01G0750732 PROTEIN 43 724 - -
Cmo01g00292 724 MobiDBLite consensus disorder prediction 58 79 - -
Cmo01g00292 724 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 43 724 - -
Cmo01g00292 724 SUPERFAMILY Protein kinase-like (PK-like) 355 657 IPR011009 -
Cmo01g00292 724 Gene3D Phosphorylase Kinase; domain 1 361 457 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00292 Cmo14g00961 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00292 Cmo-Chr1:1389479 Cmo19g00148 Cmo-Chr19:815151 2.94E-130 dispersed
Cmo04g00522 Cmo-Chr4:2593644 Cmo01g00292 Cmo-Chr1:1389479 1.44E-75 dispersed
Cmo16g00169 Cmo-Chr16:769031 Cmo01g00292 Cmo-Chr1:1389479 1.36E-84 dispersed
Cmo17g00572 Cmo-Chr17:5867772 Cmo01g00292 Cmo-Chr1:1389479 8.52E-91 dispersed
Cmo01g00292 Cmo-Chr1:1389479 Cmo14g00961 Cmo-Chr14:5121609 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74021 PF00069 Pkinase 2.50E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00292 - - csv:101219278 1226.85