Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00374 ATGGCGACGAAGACCGATGGAATCCAAGAGGAAGAAATTTCAAAGCTCGAGGAAGGCACTCTCGGAACCTGCGTCGCGCGTCTCCGTCCATCGTCTTGGGTTGCTATCATCCAAAAGGTTATTGCGGAGGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGTGGTGAACAAAATTTACGGATCAGTGACGTTCCCGGGAATCTGCGTGGTTTGGGGATTGATTGTGATGGTTATGGTGTATTCGTTGGGACACGTCTCTGGAGCGCACTTCAACCCTTCTGTTACCATCACATTCGCCATTTTTCGTCGCTTCCCCTTTTGTCAGGTTCCAATATACATAGGAGCTCAAGTAGCAGGGTCCCTTCTTGCCAGCACCACGCTGGACCTATTGTTTGAAGTGACCCCGGAAGCCTTCTTTGGGACAGTGCCTGCAGGATCCGATGTCCAATCTTTCGTCCTTGAAATCATCATCACCTTCCTCTTGCTGTTAGTCGTCTCTGGTGTCTCCACTGATCACAGAGCTGTAGGAGAATTGGCGGGAATTGTCGTTGGAATGACTGTTCTGTTGAATGTCTTCGTGGCTGGGCCGATTTCAGGAGCTTCCATGAATCCAGCTAGGACCATTGGACCTGCGATAGTGAAGGGACAGTTCAAAGGCTTATGGGTTTACATGGTTGGGCCGTTGATCGGAGCTATTGCCGGAGCATTTACTTACAACCTGATGAGATTCACAGACAAGCCATTGTCTGAGATCACCAAAAGCAGCTCATTCCTCAACCGCTCCCAAAAATCATAA 810 49.63 MATKTDGIQEEEISKLEEGTLGTCVARLRPSSWVAIIQKVIAEVIGTYFVIFTGCGAVVVNKIYGSVTFPGICVVWGLIVMVMVYSLGHVSGAHFNPSVTITFAIFRRFPFCQVPIYIGAQVAGSLLASTTLDLLFEVTPEAFFGTVPAGSDVQSFVLEIIITFLLLLVVSGVSTDHRAVGELAGIVVGMTVLLNVFVAGPISGASMNPARTIGPAIVKGQFKGLWVYMVGPLIGAIAGAFTYNLMRFTDKPLSEITKSSSFLNRSQKS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1828717 1831575 - CmoCh01G003740.1 Cmo01g00374 373857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00374 269 Pfam Major intrinsic protein 34 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo01g00374 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo01g00374 269 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo01g00374 269 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo01g00374 269 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo01g00374 269 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo01g00374 269 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo01g00374 269 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo01g00374 269 SUPERFAMILY Aquaporin-like 34 256 IPR023271 -
Cmo01g00374 269 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Cmo01g00374 269 Gene3D Glycerol uptake facilitator protein. 4 258 IPR023271 -
Cmo01g00374 269 PANTHER AQUAPORIN NIP4-1-RELATED 28 258 - -
Cmo01g00374 269 PANTHER AQUAPORIN NIP2-1 28 258 IPR034294 -
Cmo01g00374 269 TIGRFAM MIP: MIP family channel proteins 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00374 Cmo-Chr1:1828717 Cmo03g01346 Cmo-Chr3:9977225 6.47E-107 dispersed
Cmo14g01724 Cmo-Chr14:13485448 Cmo01g00374 Cmo-Chr1:1828717 1.57E-41 dispersed
Cmo01g00374 Cmo-Chr1:1828717 Cmo07g00155 Cmo-Chr7:845702 9.90E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00374 K09874 - csv:101215315 436.032