Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00394 ATGAAGCGAGATCACTCTTACCAGTCACCAAATCCCGCCGCCGGCAAGGCCAAGATATGGCCGGAGAAGGAGGACGACGACGACGACGACGAGCTCCTAGCAGCTCTAGGCTACAATGTCCGGTTGTCGGACATGGCCGACGTCGCTCTGAAACTCGAACAGCTCGAAATGGTAATGGGTTTGTCGGAAGAAGACGGAATTTCTCATCTCTCTTCCAACACCGTCCATTACAATCCCTCCGATGTGTCTTCGTGGGTTCAAAGCATGCTCGCTGAACTCAACACCGATGACTCTGTTTTCGCCGAAGCCGAATCAACCTCCGCCGTCGCGGCATTCGCCGACGACTCTGAGTACGATCTCCGAGCAATCCCGGGCGTTGCTGTTTTCCCCCAAATCGATTCCAATACACCCAGAAAGCGATTTAAGAAATCAGAGTCCGAATCGGTTCTTGTTACTGCTTCTTCTTCTTCTTCGTCGTCGTCAGAGCCGTCGCGCACGGTGGTTCTGGCGGATTCCACCGACACTGGCGTCTATCTAGTCCATACCCTCCTCGCCTGCGCCGAGGCCGTCGATATCAACAACCTCAACCTCGCCGATACATTACTGAAACACATCAGAATCCTCGTCGAGGCCCAAGGCGGCGCGATGAGGAAAGTCGCCGGTTATTTTGCACAAGCCCTTACTCACCACATTTACGGATTGCACCCACAAAAGCTCTTCGAATATGCATCTTCATACACCGATCTTCTCCAAATGAATTTCTACGTGTCTTGCCCGTATATGAAATTCGCCCATTTCACGGCCAATCAAGCGATTCTCGAATCTGTTGGCACCGCCGCAACCGTCCACGTCGTTGATTTTAGCCTTCAGCAAGGCCTCCAATGGCCGGCGTTGATTCAAGCCCTCGCGCTCCGTCCCGGAGGGCCGCCGGCGTTTTATCTCACCGGAATCGGGCCCCCGCCGGGGGAAAATTCCACCGACGGATTACAGGAAGTGGGTTTGAAATTGGCTCAATTCGCGGATACGATCGGTGTGGAATTCGAATTCCGTGGGTCTTTCTGCAACGATTTAGCCGAGCTCGATCCGTCCATACTCAATTTAGAATCAGAAACGGTCATCGTGAACTCTGTTTTCGAGCTCCATCGGCTACTGGCGCATCCGGGCGCGATCGAGAAAGTTCTAAGAACAATCAAAGAACTTAACCCCAAAATCGTCACCGTCGTGGAGCAGGTCGCTGACCACAACGGACCATCGTTCACCGGCCGATTCACAGAAGCGTTACATTATTACTCGAGCTTGTTCGATTCGTTGGAAGGGTCGCTGGCAGGGGAGGAGGATGTGGCAGGGTCGGAGGAGTATTTGGGGAGGCAAATCTTGAACGTGGTGGCGGGTGAAGGTTCCGACCGGGTCGAGCGTCACGAGACATTGGCGCAGTGGCAGAGCCGGTTGGGTTCGAGTGGGTTCGAGATGGTTCATTTGGGTTCAAACGCGTTCAAGCAGGCGAGTACTCTGTTGGCTCTGTTCGGCGGCGGAAATGGTTACAGAGTTGAAGAGAATAATGGAAGTTTGACGTTGGGTTGGCACACTCGGCCGCTTATCGCCACCTCGGCGTGGGCTGTGGCCTCCTGTACCGGCGGCGAGTCAAGCTGA 1650 54.24 MKRDHSYQSPNPAAGKAKIWPEKEDDDDDDELLAALGYNVRLSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTDDSVFAEAESTSAVAAFADDSEYDLRAIPGVAVFPQIDSNTPRKRFKKSESESVLVTASSSSSSSSEPSRTVVLADSTDTGVYLVHTLLACAEAVDINNLNLADTLLKHIRILVEAQGGAMRKVAGYFAQALTHHIYGLHPQKLFEYASSYTDLLQMNFYVSCPYMKFAHFTANQAILESVGTAATVHVVDFSLQQGLQWPALIQALALRPGGPPAFYLTGIGPPPGENSTDGLQEVGLKLAQFADTIGVEFEFRGSFCNDLAELDPSILNLESETVIVNSVFELHRLLAHPGAIEKVLRTIKELNPKIVTVVEQVADHNGPSFTGRFTEALHYYSSLFDSLEGSLAGEEDVAGSEEYLGRQILNVVAGEGSDRVERHETLAQWQSRLGSSGFEMVHLGSNAFKQASTLLALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWAVASCTGGESS 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1945242 1946891 + CmoCh01G003940.1 Cmo01g00394 373877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00394 549 Pfam Transcriptional regulator DELLA protein N terminal 30 96 IPR021914 -
Cmo01g00394 549 Gene3D - 29 93 IPR038088 -
Cmo01g00394 549 ProSiteProfiles GRAS family profile. 170 539 IPR005202 -
Cmo01g00394 549 Pfam GRAS domain family 179 538 IPR005202 -
Cmo01g00394 549 PANTHER DELLA PROTEIN RGL1 25 538 IPR030006 GO:0003712|GO:0005634
Cmo01g00394 549 MobiDBLite consensus disorder prediction 1 26 - -
Cmo01g00394 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 538 IPR005202 -
Cmo01g00394 549 SMART DELLA_2 30 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00394 Cmo-Chr1:1945242 Cmo15g00767 Cmo-Chr15:3765077 0 dispersed
Cmo15g00706 Cmo-Chr15:3434662 Cmo01g00394 Cmo-Chr1:1945242 1.03E-47 transposed
Cmo01g00394 Cmo-Chr1:1945242 Cmo14g00833 Cmo-Chr14:4320155 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9021 PF03514 GRAS 3.50E-120 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00394 K14494 - csv:101203095 823.928