Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00405 ATGCGGATGAGTTGTAATGGTTGCAGAGTTCTTCGCAAAGGTTGTAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGAGTCCTGAATCTCAGGCTAACGCTACTGTTTTTCTTGCTAAGTTTTATGGCCGTGCTGGACTCATGAATCTTATCAACGCTGGTCCTGAGCATCTACGGCCTGCGATCTTTAGATCTCTTCTCTATGAGGCTTGTGGACGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTAGTAATTGGCATCTCTGTCAGGCGGCTGTCGAGGCGGTGCTTAAAGGTTCTCCGATTATTCCGATTAATTCTGAGGCGGCCGCGACTGGCGATGGACCGCCGTTGAAGGCTTACGACATTCGTCATATTTCGAAGGATGAAAACTCCGCCGCCTCCAACGATGGTGGAGCGAATCGGCGAGTCAGGACTCGGTGCCGTTTTAAGCGATCGGCCGTGAAGGATAAAGAGAGTACTGGAATCGTATCTGCTGTAGCGGAGTCGACTCGGCGACTGTTCTCCTCGACAGAGATTAACCGTTCGTCGAGCGGCGAGTCGTCGCTGAGTCACCAATCTGACTCGCCGCATCTCGAACATGAGAGCAAAGAAACCGAGAGCATGATCTCGGTGGAGACGGCGGATGTTTCTCCTCCTTCGCCGCCGTCAGCTTTCTTCAGATCGGAATCCAGTCACGTACAACGGAAATTCACCAACCACGACGGCGGCAGGATGACAATTCCGGAAAGCGAATTAGCTCTAGAACTTACCCTGGGGATGGAGCCGGTATCACGTGCCCAGCACGTGGTTCCAATGAAGAAGCGAAAAATAGAGGGCAACGATGGGCTGAGGCCCAATAAGGAAACGTGCAATACGGTTTTGGGCCTGGATTTTGCAGCCGGAAACTAG 933 51.45 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSSNWHLCQAAVEAVLKGSPIIPINSEAAATGDGPPLKAYDIRHISKDENSAASNDGGANRRVRTRCRFKRSAVKDKESTGIVSAVAESTRRLFSSTEINRSSSGESSLSHQSDSPHLEHESKETESMISVETADVSPPSPPSAFFRSESSHVQRKFTNHDGGRMTIPESELALELTLGMEPVSRAQHVVPMKKRKIEGNDGLRPNKETCNTVLGLDFAAGN 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1979705 1981511 + CmoCh01G004050.1 Cmo01g00405 373888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00405 310 MobiDBLite consensus disorder prediction 184 239 - -
Cmo01g00405 310 MobiDBLite consensus disorder prediction 201 216 - -
Cmo01g00405 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 304 - -
Cmo01g00405 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 304 - -
Cmo01g00405 310 MobiDBLite consensus disorder prediction 217 239 - -
Cmo01g00405 310 PIRSF AS2 1 307 IPR017414 -
Cmo01g00405 310 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cmo01g00405 310 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cmo01g00405 310 MobiDBLite consensus disorder prediction 184 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00405 Cmo-Chr1:1979705 Cmo10g00250 Cmo-Chr10:1112817 7.11E-80 dispersed
Cmo01g00405 Cmo-Chr1:1979705 Cmo14g00825 Cmo-Chr14:4272280 7.05E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9023 PF03195 LOB 1.60E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00405 - - cmax:111492566 580.867