Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00406 ATGGCATATGATACTCTCTCTTTCTACTGGCTTACCCCTAGAAGAATCAGGAAGAGGATGGCCGAGCAAGGCGTTTATGGCCCCGACCCACGACCCTTCACTGGAAACATCCTCGATGTCGTAGAGCTTGTGAAGAAATCCACAGCTAACGACATGAGCTCCATCAGTCATGACATCGTTGATCGTTTGTTACCCTATTACTCTACATGGACAAAGCAATACGGAAAGAGGTTTATATATTGGAACGGGATGGATTCGAGGCTGTGTTTGACGGAGATGGAGTTGGTGAAGGAAGTATTGGGGAAGGGCAGCAATGTGTGTGGGAGGTCATGGATGCAAAGACAAGGGACCAAACACTTCATAGGGAAGGGATTGTTGATGGCAAATGGAGAAGCTTGGCATCATCAACGTCACCTGATTTCACCTGCGTTTAGAGGGGAAAGGCTCAAGAGCTACGCGGGGTTGATGGTGGAATGCACCAACAAGATGATCCAATCCTTGGAGGCCCAATTGGAGGAGGGCCAGACAGTGTTCGAAATTTCTGATTGCATGAAACGCCTCACCGCCGACATCATTTCCCGGACTGCGTTCGACACAAGCTCCGACAAAGGCATCCAAATCTTTGATATGCTCACTCAGCTTCAACACCTCTGCGCACAAGCCAGCCGCCACCTCTGCATCCCCGGTAGTCGGTTTTTTCCGAGTAAATACAACAGAAAAATAAAGGCACTAAAAATGGAGATGGAGAGGATGTTAATGGAGATCATTGGAAGCAGAAAAGAGGGCGTGGAGATAGGAAGAAGCAGTGGATATGGAAGCGATTTGTTGGGAATGCTATTGAAGGAGATGCAGAGAAAGAGAGACGATGGATTCAGCTTAGACTTGCAGCTCGTAATGGATGAATGCAAAACTTTCTTCTTTGCTGGCCATGATACCACTTCTCTTTTGCTCAGCTGGACCTTCATGTTGCTCGCTACTAACCCTTCTTGGCAACAAAAGGCTCGTGCTGAAGTCGCCCAAGTTTGCAACGGCCGACTTCCCTCGGTCGAACTTCTCCCTAAGCTCACTTTGCTGAACATGGTGATAAACGAGTCCCTAAGGCTTTACCCACCGGCCACGGTGCTACCGAGAATAGCGTTCGAGGACATAAAGATAAGAGATTTAGAGATCCCGAAAGGGCTATCAGTATGGATACCAGTGCTTGCAATTCATCACAGCGAGGAGCTGTGGGGAAAAGACGCAAACGAGTTCAACCCAGAGAGGTTTGAGTCGAAAGCATTCAGTGGCGGGCGGTTCATTCCATTTTCCAGCGGACCAAGGACCTGCATCGGCCAGGGGTTCGCGTTGATGGAAGCTAAGATCATATTGGCTATGTTACTCTCCAAGTTCAGCTTCACTATTTCCGACACTTATCGCCATGCTCCTGTTGTTGTTCTCACCATACAGCCTAAGTATGGAATTCAAGTTTGCCTCACTCCATTGCCTTCTTGA 1491 48.36 MAYDTLSFYWLTPRRIRKRMAEQGVYGPDPRPFTGNILDVVELVKKSTANDMSSISHDIVDRLLPYYSTWTKQYGKRFIYWNGMDSRLCLTEMELVKEVLGKGSNVCGRSWMQRQGTKHFIGKGLLMANGEAWHHQRHLISPAFRGERLKSYAGLMVECTNKMIQSLEAQLEEGQTVFEISDCMKRLTADIISRTAFDTSSDKGIQIFDMLTQLQHLCAQASRHLCIPGSRFFPSKYNRKIKALKMEMERMLMEIIGSRKEGVEIGRSSGYGSDLLGMLLKEMQRKRDDGFSLDLQLVMDECKTFFFAGHDTTSLLLSWTFMLLATNPSWQQKARAEVAQVCNGRLPSVELLPKLTLLNMVINESLRLYPPATVLPRIAFEDIKIRDLEIPKGLSVWIPVLAIHHSEELWGKDANEFNPERFESKAFSGGRFIPFSSGPRTCIGQGFALMEAKIILAMLLSKFSFTISDTYRHAPVVVLTIQPKYGIQVCLTPLPS 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1982694 1986161 - CmoCh01G004060.1 Cmo01g00406 373889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00406 496 Gene3D Cytochrome P450 9 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PANTHER CYTOCHROME P450 FAMILY MEMBER 2 490 - -
Cmo01g00406 496 SUPERFAMILY Cytochrome P450 58 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 Pfam Cytochrome P450 67 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS P450 superfamily signature 442 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00406 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
Cmo01g00406 496 PANTHER CYTOCHROME P450 FAMILY PROTEIN 2 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00406 Cmo-Chr1:1982694 Cmo15g00197 Cmo-Chr15:906216 0 dispersed
Cmo17g00084 Cmo-Chr17:446404 Cmo01g00406 Cmo-Chr1:1982694 2.28E-108 dispersed
Cmo01g00406 Cmo-Chr1:1982694 Cmo14g00824 Cmo-Chr14:4261945 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00406 K10717 - csv:101213604 816.609