Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00412 ATGGTTCAGCCGACAAATCCATCCAAATTGCGATGGGGGGAGCTAGATGACGATGATGGGGATCTCGATTTTCTTCTTCCTCCCAAGCAAGTTATTGGGCCGGACGAAAATGGGTTGAAGAAAACTATTGAGTATCAGTTTAACGAAGATGGAAACAAGGTCAAAATCACGACGACCTCTCGAACGCGCAAGCTTGCTAATGCTCGTCTGAGTAAACATGCCATAGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTTCATGAAGACGTCGGAAGTAGGCTCACTATGGTCTCGACCGAGGAGATTCTTCTCGAGCGTCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGGGACCCACTAGCTCAACTTGGGAAAGGTGGAGCTGTTCTTATGGTCTGCCGAACCTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCATCACAAGCTGATGGATTGGATAAGACTGTTGCACCAGAGGCTACAACTGCCGCTCCTGGTGCAACAAAGGGAGCGTATGTACCTCCAGGTATGAGAGCAGGGGCAGAGAGGACTGGAACTGACATGAGACGTAGAAATGATGAGAACTCTGTTCGTGTGACCAACCTTTCGGAGGATACTAGAGAGCCTGACTTACTTGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTCGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAACCGTGAGGATGCACAAAGAGCAATTAACAAACTCAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCGACTTAA 867 48.79 MVQPTNPSKLRWGELDDDDGDLDFLLPPKQVIGPDENGLKKTIEYQFNEDGNKVKITTTSRTRKLANARLSKHAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLASQADGLDKTVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2012474 2015422 + CmoCh01G004120.1 Cmo01g00412 373895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00412 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Cmo01g00412 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Cmo01g00412 288 Gene3D - 170 288 IPR012677 -
Cmo01g00412 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cmo01g00412 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cmo01g00412 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cmo01g00412 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cmo01g00412 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Cmo01g00412 288 CDD eIF3G 37 156 IPR024675 -
Cmo01g00412 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cmo01g00412 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Cmo01g00412 288 Pfam Eukaryotic translation initiation factor 3 subunit G 30 157 IPR024675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00412 Cmo-Chr1:2012474 Cmo17g00653 Cmo-Chr17:6770649 8.86E-12 dispersed
Cmo13g01151 Cmo-Chr13:9303138 Cmo01g00412 Cmo-Chr1:2012474 0 transposed
Cmo01g00412 Cmo-Chr1:2012474 Cmo14g00819 Cmo-Chr14:4227272 0 wgd
Cmo01g00412 Cmo-Chr1:2012474 Cmo14g01225 Cmo-Chr14:10409015 1.61E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00412 K03248 - csv:101207022 544.658