Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00425 ATGGATCATTCCCCAATTCCCTCCTTCCTTCTGCTCTTTTCCTTTGCCCATCTTTTCCTCGTCTTCGGGAATCCATTTGATTCCTGCACCAATCGCTTCAACTGCGGCAATATCACCGACGTCGGCTTCCCGTTCTGGGGCGACCAAAGGCCCGCAGACTGCGGCCATCCGGCGCTGAAATTGACCTGCGAAGGAGGAAATACGACGATCGTAATAAAGGAGATCAAATACCAGATTCTAAAATTCAGCAGCGTAAACGATTCCCTAAGACTCACCATCGCCAGAGACGATTACATGGACGATCTCTGCCCTAGCAAATTCATCAACACCACAATCGATTACAATCTCTTCGATACGATTCCTAATTATCGAAACATTACCTTGCTCTATTGCTCCACCTCTCCAGTTGCCGGACAATTTACCTGTCCTGATTATGAATTCGGCCTCATTCAGTTGAATCCCGTCGCTTCTAGTCTCTGTAATGTGAGCGTAATCGTGCCGGTTTCCTTGGATTCTTTCCCGCAGGTGAGCGATTTGGTGAACTCTTCTGAGATATTGAAGGCCATTAAAGAGGGATTTGAGGTGAGATTGAAGAAGGATAGCGGCGGATGTGGAATTTGTGAAGAGTCCAACGGCGTTTGCGGTTACGATTGGAGTTTGAATCAGACGACTTGCTATTGTCGCCACGGTGCTTATAATGATAACGGAGCTTGTCAGAGTACGCCGGCCGGAGGAAGTCCGTCGTCTTCTCCAGGTGGGAGTGATGACTCTAACAACACATCCCTGATTATAGGCCTTTCTGTTGGTGGGGCAGCTGTATTAGGCTTGTGCTTGGGATGCTGTGTCTTCTGCATTAAACAACGAAAGAAAACACATGTCCTGAAGAAGTTGAAAACCCAAGATCTTCCTTCGCCTCCTTCAAGCGCAGGCACTCTGGCTCCCTCCACGTTTCGTTCTAATAGTACTCTGTCTTATCCTTATGCTAGATCTGATCATGGGAATGGGAGCTCCTACTTTGGAGCTCAGCTCTTCACCTATGCCGAACTTGAGGAAGCTACTCATAATTTTGACCCTTCTAGGGAGCTTGGAGATGGAGGCTATGGCACTGTTTACTCGGTGAAGTGCTTATACGAAAACAATAGTAAACGAGTCGAGCAGTTCATGAATGAAATCGAGATTCTATCACAATTGCAACACCAGAACCTCGTAAAGCTTTACGGATGCACATCAAGACATAGTCAGGAACTTATCCTAGTATATGAATACATTCCCAATGGAACAGTGGCAGACCATCTACATGGAAAACGAGCAAATTCAGGTCTGCTCAGTTGGTCAGTTCGGCTGAAGATTGCTATAGAGACTGCCAATGCACTAGCTTACCTCCACCGCAAAGACATCATTCATCGCGACGTCAAAACCAACAACATTCTCCTAGACAACAACTTCAAAGTAAAAGTGGCGGATTTCGGCCTCTCACGGTTATTCCCCCTTCATGTCACTCATGTTTCAACTGCTCCACAAGGAACACCCGGCTACGTTGATCCTGAGTATTACCAATGCTACCAAGTTACCGACAAGAGCGACGTGTATAGCTTCGGAGTCGTTTTGATCGAGCTTATATCGTCGTTGCAAGCAGTCGACACCGACAGGAATAGAAATGACATCAATTTGGCGAACATGGGCATAGATAGAATCAAAAAACATGCTTTACATGACTTGGTAGATCCAGAGCTTGGGTTTGAGAGGGATTATGCAGTAAGGTGTATGATAACATCAGTGGCAGAGTTGGCGGTGCAATGTCTTCAACAATCACGGGATATGCGGCCTTCCATGGACGAAGTAGTGGAAGTTCTAAGAGAAATAGAGCATGAAGAACTGGCTGCTCGCAAGGCAGAGGTGTTGGATATAGGGTCTGATAATGTGCGGCTTTTAAGGAATGCATCATCTCTGCTTTCGCCAGATTCTGGAGCAGTAACAGATAAATGGGTTACCACATTTTTCTCTTGA 2007 46.29 MDHSPIPSFLLLFSFAHLFLVFGNPFDSCTNRFNCGNITDVGFPFWGDQRPADCGHPALKLTCEGGNTTIVIKEIKYQILKFSSVNDSLRLTIARDDYMDDLCPSKFINTTIDYNLFDTIPNYRNITLLYCSTSPVAGQFTCPDYEFGLIQLNPVASSLCNVSVIVPVSLDSFPQVSDLVNSSEILKAIKEGFEVRLKKDSGGCGICEESNGVCGYDWSLNQTTCYCRHGAYNDNGACQSTPAGGSPSSSPGGSDDSNNTSLIIGLSVGGAAVLGLCLGCCVFCIKQRKKTHVLKKLKTQDLPSPPSSAGTLAPSTFRSNSTLSYPYARSDHGNGSSYFGAQLFTYAELEEATHNFDPSRELGDGGYGTVYSVKCLYENNSKRVEQFMNEIEILSQLQHQNLVKLYGCTSRHSQELILVYEYIPNGTVADHLHGKRANSGLLSWSVRLKIAIETANALAYLHRKDIIHRDVKTNNILLDNNFKVKVADFGLSRLFPLHVTHVSTAPQGTPGYVDPEYYQCYQVTDKSDVYSFGVVLIELISSLQAVDTDRNRNDINLANMGIDRIKKHALHDLVDPELGFERDYAVRCMITSVAELAVQCLQQSRDMRPSMDEVVEVLREIEHEELAARKAEVLDIGSDNVRLLRNASSLLSPDSGAVTDKWVTTFFS 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2081165 2084978 + CmoCh01G004250.1 Cmo01g00425 373908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00425 668 Gene3D Transferase(Phosphotransferase) domain 1 423 634 - -
Cmo01g00425 668 ProSiteProfiles Protein kinase domain profile. 356 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00425 668 SMART serkin_6 356 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00425 668 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 656 IPR044652 -
Cmo01g00425 668 Gene3D Phosphorylase Kinase; domain 1 330 422 - -
Cmo01g00425 668 PANTHER - 11 656 - -
Cmo01g00425 668 Pfam Wall-associated receptor kinase galacturonan-binding 29 91 IPR025287 GO:0030247
Cmo01g00425 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cmo01g00425 668 Pfam Wall-associated receptor kinase C-terminal 157 229 IPR032872 -
Cmo01g00425 668 SUPERFAMILY Protein kinase-like (PK-like) 336 623 IPR011009 -
Cmo01g00425 668 Pfam Protein tyrosine and serine/threonine kinase 372 618 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00425 Cmo-Chr1:2081165 Cmo11g00288 Cmo-Chr11:1407876 2.16E-150 dispersed
Cmo14g01200 Cmo-Chr14:10170525 Cmo01g00425 Cmo-Chr1:2081165 0 transposed
Cmo15g00054 Cmo-Chr15:308251 Cmo01g00425 Cmo-Chr1:2081165 3.48E-09 transposed
Cmo15g00055 Cmo-Chr15:310263 Cmo01g00425 Cmo-Chr1:2081165 0 transposed
Cmo01g00425 Cmo-Chr1:2081165 Cmo10g00329 Cmo-Chr10:1483079 1.88E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74022 PF07714 PK_Tyr_Ser-Thr 6.40E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00425 - - mcha:111016973 960.288