Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00448 ATGATCATGCCTGCTCCCATTCTCAGATTACCCTTTTTCCTTCCCATTCTCGCCATTTTGCTACTCTTTTCCACCTTTCTTACCCCAACAGAAGCGTATGATCCGCTTGATCCAAATGGAAACATTACTATCAAGTGGGATGTTATAAGCTGGACCGCTGATGGCTATGTTGCTGTCGTTACTATGTATAATTTCCAACAATATCGTCATATTCAAGCACCGGGATGGTCTCTGCAATGGGGATGGGTTAAGAAAGAGGTCATATGGAGCATGTTGGGAGGCCAAGCAACCGAACAAGGTGATTGTTCGAGATATAAGGGGAACATCCCTCATAGCTGCAAGAGGGATCCAACCATTGTTGATCTATTGCCCGGGACTCCGTATAACCAGCAGATTGCAAATTGCTGCAAAGGCGGAGTTCTCAACTCCTGGGTGCAAGATCCAACTACTGCAGTGAGTTCATTTCAACTCAGTGTTGGTGCTGCGGGAACCTCGAATAAAACTGTCAGATTACCAAAGAACTTCACCTTAAAAGCACCTGGGCCTGGTTATACTTGTGGACCTGCAAAGATCGTTAGACCGACCAAATTCATTTCGTCTGACAAACGGAGAGTTACACAGGCCTTGATGACATGGAATATTACATGCACATATTCACAATTTCTGGCTCAAAAAACTCCGACTTGCTGTGTTTCGCTGTCATCATTTTACAACGACACGATTGTTTCTTGCCCTAAATGCTCGTGTGGTTGTCCAAACAACTTGAAGGGAGCCCAAAATTGTGTGGAGCCAAATTCTCCGCACTTAGCCTCTGTTGTTACCAATGCTAGTTCTAGCAATAACAATGTGGTACCTTCAGTTCAGTGTACAGGCCATATGTGCCCGATCCGAGTTCACTGGCATGTGAAGATTAACTATAAGGAGTATTGGCGTGCCAAGATCACAATTACAAACTTCAATTACGCGATGAACTATACAAATTGGAACTTAGTTGCCCAACATCCCAACTTCGACAATTTAACAACGATTTTCAGCTTCAACTACATGTCGATCAATCCATATGGAACTATAAATGATACTGCAGTCCTGTGGGGAGTCAAGTTCTACAATGATTTGCTCATGCAAGCAGGCCCTTCTGGGAATGTGCAGACAGAGCTACTTTTCCGAAAGAATCCATCGGTTTTCACATTTGATAAAGGCTGGGCTTTCCCTCGGAGGATTTATTTCAATGGCGACAACTGCGTCATGCCGCCTCCAGATGCCTATCCCCACTCACCAAACACGGGTTTGAAGCAAGGTGTCTCGTTGTTTACTACGCTATTGTCGATTTCCTTGACTCTCCTTTCCCTTCGCCATTTATTTGCATAA 1368 44.37 MIMPAPILRLPFFLPILAILLLFSTFLTPTEAYDPLDPNGNITIKWDVISWTADGYVAVVTMYNFQQYRHIQAPGWSLQWGWVKKEVIWSMLGGQATEQGDCSRYKGNIPHSCKRDPTIVDLLPGTPYNQQIANCCKGGVLNSWVQDPTTAVSSFQLSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVRPTKFISSDKRRVTQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCPNNLKGAQNCVEPNSPHLASVVTNASSSNNNVVPSVQCTGHMCPIRVHWHVKINYKEYWRAKITITNFNYAMNYTNWNLVAQHPNFDNLTTIFSFNYMSINPYGTINDTAVLWGVKFYNDLLMQAGPSGNVQTELLFRKNPSVFTFDKGWAFPRRIYFNGDNCVMPPPDAYPHSPNTGLKQGVSLFTTLLSISLTLLSLRHLFA 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2161265 2164055 + CmoCh01G004480.1 Cmo01g00448 373931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00448 455 PIRSF COBRA 7 455 IPR006918 GO:0010215|GO:0031225
Cmo01g00448 455 PANTHER COBRA-LIKE PROTEIN 12 448 - -
Cmo01g00448 455 PANTHER PROTEIN COBRA 12 448 IPR006918 GO:0010215|GO:0031225
Cmo01g00448 455 Pfam COBRA-like protein 56 219 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00448 Cmo-Chr1:2161265 Cmo11g00221 Cmo-Chr11:1105614 0 dispersed
Cmo01g00448 Cmo-Chr1:2161265 Cmo01g00449 Cmo-Chr1:2164388 0 tandem
Cmo01g00448 Cmo-Chr1:2161265 Cmo10g00306 Cmo-Chr10:1366269 0 wgd
Cmo01g00448 Cmo-Chr1:2161265 Cmo13g01107 Cmo-Chr13:9067595 1.59E-176 wgd
Cmo01g00448 Cmo-Chr1:2161265 Cmo14g01186 Cmo-Chr14:9952375 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00448 - - csv:101207224 800.431