Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00454 ATGGGAAGAGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTAACATTTGCCAAGAGAAGGAGTGGGCTGTTGAAGAAAGCTTATGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGCACTTCCAATATGCTCAAGACACTGGAAAGGTACCAGAAATGCAGTTATGGAGCTGTCGAGGTCGCCAAACCCGCCAAAGAGCTCGAGAGTAGCTATAGAGAGTACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGAGTTGGGTCCATTGAACTCTAAAGAGCTTGAGCAGCTGGAGCGTCAGCTCGAGTCTTCTTTGAAGCAAGTTAGGTCTACTAAGACCCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGATCTCTAACATTAAAGCTAGAAGAAATGAGTTCAAGAAACAACATAAGACTAACATGGGAAGAAGTAGACCAAAGCATGTCATATGCACCACAGAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAACCCCACTCTGCAAATTGGATACAGTGGTTCAGTATCAGATCAAATTACAGCCACCACTGCCCCAAATCATGCCCAACAAGTCAATGCCTTTCTCCCTGGTTGGATGCTTTGA 741 44.4 MGRGRVELKRIENKINRQVTFAKRRSGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVAKPAKELESSYREYLKLKARFESLQRTQRNLLGEELGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRSLTLKLEEMSSRNNIRLTWEEVDQSMSYAPQNAQTQGFFQPLDCNPTLQIGYSGSVSDQITATTAPNHAQQVNAFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2174856 2178407 + CmoCh01G004540.1 Cmo01g00454 373937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00454 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cmo01g00454 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo01g00454 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo01g00454 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Cmo01g00454 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cmo01g00454 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo01g00454 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g00454 246 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g00454 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo01g00454 246 Coils Coil 121 144 - -
Cmo01g00454 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Cmo01g00454 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cmo01g00454 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo01g00454 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo01g00454 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00454 Cmo14g01181 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00454 Cmo-Chr1:2174856 Cmo08g00175 Cmo-Chr8:1016886 1.76E-109 dispersed
Cmo08g00176 Cmo-Chr8:1023858 Cmo01g00454 Cmo-Chr1:2174856 7.76E-37 dispersed
Cmo01g00454 Cmo-Chr1:2174856 Cmo01g00455 Cmo-Chr1:2180900 3.70E-55 tandem
Cmo01g00454 Cmo-Chr1:2174856 Cmo13g01103 Cmo-Chr13:9050079 1.97E-59 wgd
Cmo01g00454 Cmo-Chr1:2174856 Cmo14g01180 Cmo-Chr14:9737822 7.05E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9027 PF01486 K-box 2.70E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00454 K09264 - csv:101208204 442.965