Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00455 ATGGTCTCCCTCCAACCATTCCTCGACAGCTCAATGCAACATTCTCTCCTCCTCTCAAACTCCAACCGAATCACTTCCCTCATCCACAATTATAGAAACAACAACAATTCCCCACTCCCTCTTCTTCTTCTTCCTTTTCTCCTTTTAGGGTTTGTGTTGGTTTCTGCTCAAGAACCCTCCACCATGGGCAGAGGGAGAGTGCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCTAAGCGTAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTCCTTTGCGATGCAGATGTTGCCTTGATTGTCTTCTCCACCAAAGGAAAGCTCTTTGAGTACTCCACTCATGCCAGCATGGAGAAGATCTTGGAAAAATATGAGAGGTGTTCTTATGCAGAGAGACCATTGGCCACAAATGCAGATTCTGATTTACAGGTAAGTTGGTGTGAGGAGTACCCAAAAATTGCAGCCAGAATGGAAATTATACAGAAGAACATCAGGCATTATTTGGGAGAAGAGCTTGAGCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAGCAACTTGATTCATCACTGAAGCGCATAAGAGCCAGAAAGAACCAACTAATGCAAGAATCTATCTCATTGCTACACAAAAAGGTGAATGACTTTTGGACCAATATATTTGGTATCATTATTGAGGCTTATATGACTCTAATGGCTTCCATTATGGGTTAA 735 42.99 MVSLQPFLDSSMQHSLLLSNSNRITSLIHNYRNNNNSPLPLLLLPFLLLGFVLVSAQEPSTMGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTHASMEKILEKYERCSYAERPLATNADSDLQVSWCEEYPKIAARMEIIQKNIRHYLGEELEPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISLLHKKVNDFWTNIFGIIIEAYMTLMASIMG 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2180900 2186007 + CmoCh01G004550.1 Cmo01g00455 373938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00455 244 ProSiteProfiles K-box domain profile. 150 244 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g00455 244 Pfam K-box region 148 221 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g00455 244 PANTHER BNAA09G02740D PROTEIN 62 221 - -
Cmo01g00455 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 62 221 - -
Cmo01g00455 244 SMART madsneu2 62 121 IPR002100 GO:0003677|GO:0046983
Cmo01g00455 244 Gene3D - 74 146 IPR036879 GO:0003677|GO:0046983
Cmo01g00455 244 ProSiteProfiles MADS-box domain profile. 62 122 IPR002100 GO:0003677|GO:0046983
Cmo01g00455 244 SUPERFAMILY SRF-like 63 142 IPR036879 GO:0003677|GO:0046983
Cmo01g00455 244 Coils Coil 184 211 - -
Cmo01g00455 244 CDD MADS_MEF2_like 63 137 IPR033896 GO:0000977|GO:0045944
Cmo01g00455 244 ProSitePatterns MADS-box domain signature. 64 118 IPR002100 GO:0003677|GO:0046983
Cmo01g00455 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 71 118 IPR002100 GO:0003677|GO:0046983
Cmo01g00455 244 PRINTS MADS domain signature 99 120 IPR002100 GO:0003677|GO:0046983
Cmo01g00455 244 PRINTS MADS domain signature 84 99 IPR002100 GO:0003677|GO:0046983
Cmo01g00455 244 PRINTS MADS domain signature 64 84 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00455 Cmo14g01180 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00455 Cmo-Chr1:2180900 Cmo14g01180 Cmo-Chr14:9737822 2.34E-94 dispersed
Cmo01g00454 Cmo-Chr1:2174856 Cmo01g00455 Cmo-Chr1:2180900 3.70E-55 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9028 PF01486 K-box 3.30E-23 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00455 K09264 - csv:101218674 268.085