Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00478 ATGGGTACCTCTTTGTTGTCGTTTGCAGTGATCAAATGGTTCTCTTCTTGTATAAACACTTCGCCGATACTTACTTCCAAGTTCTTTTTGCTTTTCTGCTTCGTTATTTTATTTCAGACTGAAGTTATTTTGGGCGATTCAGATAAATCGGTGCTTCTTCAGTTCAAAAATGCTGTTTCTGATCCATCGGGGTTGCTTGCGAGTTGGACTGCGAGTGGGTCTGATTGCTGTGTCTGGTTTGGCGTTTCTTGCGACTTGAATTCTCGGGTTGTGTCACTCAACATTTCCGGGAATGGCGGTGGAGGTCATTTGTGCTCTGATTCTTCTAAATTTCCTCTTTATGGGCTTGGAATTAGGAGGGGTTGTGTGGGTATTAGAGGCTCACTGATTGGGAAGATTCCGCCGGTGATCGGGAAGCTCACTGAGCTTAGGTCTTTGTCGCTTCCGTTTAATGGTTTTGAAGGCGAAATTCCTCCTGGAATTTTTGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGAAACTCTGTAACTGGGGTGCTTCGTGATGATTTCCTTAGACTGAGCAAGTTGCGGGTTCTTAATCTTGGATTCAATAGGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGGTTGTGCGAGTTTAGAGATCTTGAATTTAGCTGGAAATCGATTGAATGGGATAATTCCACAGTTTGTTGGTCGATTGAGAGGGCTCTACTTGTCTTTGAATCTTTTTTCAGGAACCATTCCGAGTGAGCTTGGAAATAACTGTGGAAAGCTTGAGCATCTCGACCTCTCTGGTAATTATTTGGTCAGTGGGATTCCAAGAAATTTAGGAAATTGCAATCAGTTGAAGACACTGTTGCTGTATTCTAATATGTTGGAGGAAGCCATTCCAGCTGACATTGCTAAGTTACAGAAGCTAGAAGTGCTTGATCTTTCAAGGAACAGCCTCAGTGGTCCGATACCGTCTCAGCTGGGAAACTGCCAGCAGTTGTCTGTTCTTGTGCTCTCGAATCTCTTCGATCCAATTCCGAAGATCAATTACACAGACGAAGACGAACTTAGTGATGATGGTTTTAACTATTTTGCAGGCGGTATACCTGAGTCGATAACAACCCTTCCAAAGCTGAAGATACTGTGGGCTCCTAATTCAAATCTCGAAGGCAGATTCCCTTCCAAATGGGGTAAGTGTGAAAGCTTGGAGATGATTAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCTAGTGAGCTTAGCGTCTGCAAAAAGCTCAAAGTCCTTGATTTAAGCTCCAACCGGCTTTCTGGTGAGCTCGATAAAAACCTTCCAGTTCCTTATATGTCTCTGTTTGATCTTAGTGGTAACCACTTTATTGGAGATATTCCTGTGTTCTGTGGCAATGATTGCTCGCCACCGATGTTATTTTCAAGGGGATATTTGGATCTTGATGATCCATCATCTCGATATCTTGCGTTTTTTACCACTAGTATTCGAGGTGCAACCCCTTTTGAATTTCTTGGAGATGATGACCTGATAGTACATAACTTAGGGGAGAATAACTTTACAGGAAATCTTCTGTCGTTTCCAATTCCACGTGAAAGACTGGGTAAGAAAACTGTTTATGCTTATCTTGTGGGTGGTAATAAGCTCACCGGGCCATTCCCTGATAGTATATTTGAGAAATGTGAGGATATGGGAGGACTGATCTTCAATGTTAGCAATAACAAGATATCTGGTCCATTTTCTAAGTCAATTGGTAAAAACTGTGGTTCTCTTAAGTTCTTGGATGCATCTGGTAATCAGATGACTGGCGAGGTACCTCCCAGCTTTGGTGATCTATTAGCTCTGAATCACCTGAACCTGAGTTGGAACAAGTTTCAGTATCACATACCGGCCTCTCTCGGACAGATTGCTGGTTTAAAGTACCTTTGTTTGGCTGGCAATAGCTTTAATGGTTCTATACCCTCGACCTTCGGAAAGTTGCAGGCTTTGGAGTTGCTTGATCTTTCGTATAACGATCTTTCAGGTGGAATTCCAGTCGATCTTGTTAAATTGAGAGGCCTAAAAGTTCTGCTGCTCAGCAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTGGCAAATGTTACTACACTCTCTGCATTTAATGTGTCATTCAATAACTTGTCTGGTTCATTGCCATCAAACAACATGATTAAATGTAGTGGTGCGATTGGGAACCCGTACCTACGATCGTGCCATATGTTTTCACTGGCAGTGCCATCGTCTGAAATGCGAGGTTCAGTTGGCGACCCGAGTAGTCTTGCAGCTTCACCGTCTGATGTTGTACCGCAGACCGGTGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACATCCGCCTCCGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTGTTTCTATATACCCGAAAGTGGAATTCGAGGTCTAAAGTAATTGGATCAATGAGAAGGGAAGTCACGGTTTTTACTGATATTGGGGTTTCTTTGACATTTGAGAATGTCGTGCGTGCCACGAACAATTTTAATACCAGTAACTGCATTGGCAGTGGAGGGTTTGGAGCAACTTACAAAGCAGAGATTGCATCGGGAGTGCTACTTGCAATAAAACGCCTCGCTGTTGGTCGATTTCAAGGCGTCCAACAGTTCGATGCAGAGATTAAAACTCTTGGAAGGCTGCGCCACCCGAACCTCGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCTTGATATATAATTATTTGCCAGGAGGTAATTTGGAAAAGTTCATCCAGGAGAGATCTACAAGAGCAGTGGATTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGTGCGCTTGCATATCTTCATGATCAGTGCGTACCACGAGTCCTCCACCGCGACGTGAAACCGAGCAATATACTATTAGACGATGATTTCAATGCTTATCTATCTGATTTCGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACAACAGGTGTGGCTGGAACATTCGGCTACGTCGCTCCCGAATACGCCATGACTTGTCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCGGACAAGAAAGCACTAGATCCCTCGTTTTCCTCGTACGGTAATGGCTTTAACATTGTAGCTTGGGCATGTATGCTGCTTCCACAGGGACGCGCCAAGGAATTCTTCACATCAGGGTTATGGGAGGTAGGCCCCCATGATGATCTGGTTGAAGTATTACACTTAGCAGTTGTGTGTACAGTCGATTCTCTGTCGACGAGGCCGACGATGAAGCAGGTGGTACGGCGGCTTAAGCAGCTTCAACCGCCGTCATGTTAG 3402 44.3 MGTSLLSFAVIKWFSSCINTSPILTSKFFLLFCFVILFQTEVILGDSDKSVLLQFKNAVSDPSGLLASWTASGSDCCVWFGVSCDLNSRVVSLNISGNGGGGHLCSDSSKFPLYGLGIRRGCVGIRGSLIGKIPPVIGKLTELRSLSLPFNGFEGEIPPGIFGLENLEVLDLEGNSVTGVLRDDFLRLSKLRVLNLGFNRLTGEIPSSLSGCASLEILNLAGNRLNGIIPQFVGRLRGLYLSLNLFSGTIPSELGNNCGKLEHLDLSGNYLVSGIPRNLGNCNQLKTLLLYSNMLEEAIPADIAKLQKLEVLDLSRNSLSGPIPSQLGNCQQLSVLVLSNLFDPIPKINYTDEDELSDDGFNYFAGGIPESITTLPKLKILWAPNSNLEGRFPSKWGKCESLEMINLAGNYLYGELPSELSVCKKLKVLDLSSNRLSGELDKNLPVPYMSLFDLSGNHFIGDIPVFCGNDCSPPMLFSRGYLDLDDPSSRYLAFFTTSIRGATPFEFLGDDDLIVHNLGENNFTGNLLSFPIPRERLGKKTVYAYLVGGNKLTGPFPDSIFEKCEDMGGLIFNVSNNKISGPFSKSIGKNCGSLKFLDASGNQMTGEVPPSFGDLLALNHLNLSWNKFQYHIPASLGQIAGLKYLCLAGNSFNGSIPSTFGKLQALELLDLSYNDLSGGIPVDLVKLRGLKVLLLSNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNMIKCSGAIGNPYLRSCHMFSLAVPSSEMRGSVGDPSSLAASPSDVVPQTGGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVIGSMRREVTVFTDIGVSLTFENVVRATNNFNTSNCIGSGGFGATYKAEIASGVLLAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLPQGRAKEFFTSGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2280890 2284291 - CmoCh01G004780.1 Cmo01g00478 373961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00478 1133 SUPERFAMILY Protein kinase-like (PK-like) 838 1125 IPR011009 -
Cmo01g00478 1133 Pfam Protein kinase domain 856 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00478 1133 Pfam Leucine Rich repeat 423 439 IPR001611 GO:0005515
Cmo01g00478 1133 ProSitePatterns Protein kinases ATP-binding region signature. 860 882 IPR017441 GO:0005524
Cmo01g00478 1133 SMART LRR_typ_2 687 710 IPR003591 -
Cmo01g00478 1133 SMART LRR_typ_2 615 639 IPR003591 -
Cmo01g00478 1133 SMART LRR_typ_2 306 330 IPR003591 -
Cmo01g00478 1133 SMART LRR_typ_2 233 257 IPR003591 -
Cmo01g00478 1133 SMART LRR_typ_2 164 187 IPR003591 -
Cmo01g00478 1133 SMART LRR_typ_2 188 212 IPR003591 -
Cmo01g00478 1133 SMART LRR_typ_2 258 282 IPR003591 -
Cmo01g00478 1133 Gene3D Ribonuclease Inhibitor 355 535 IPR032675 -
Cmo01g00478 1133 Gene3D Ribonuclease Inhibitor 234 348 IPR032675 -
Cmo01g00478 1133 Gene3D Transferase(Phosphotransferase) domain 1 930 1130 - -
Cmo01g00478 1133 Gene3D Ribonuclease Inhibitor 542 752 IPR032675 -
Cmo01g00478 1133 SUPERFAMILY L domain-like 487 749 - -
Cmo01g00478 1133 SMART serkin_6 854 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00478 1133 PRINTS Leucine-rich repeat signature 426 439 - -
Cmo01g00478 1133 PRINTS Leucine-rich repeat signature 663 676 - -
Cmo01g00478 1133 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Cmo01g00478 1133 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 26 1132 - -
Cmo01g00478 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 974 986 IPR008271 GO:0004672|GO:0006468
Cmo01g00478 1133 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515
Cmo01g00478 1133 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515
Cmo01g00478 1133 SUPERFAMILY L domain-like 361 468 - -
Cmo01g00478 1133 SUPERFAMILY L domain-like 47 341 - -
Cmo01g00478 1133 Gene3D Ribonuclease Inhibitor 45 233 IPR032675 -
Cmo01g00478 1133 CDD STKc_IRAK 860 1128 - -
Cmo01g00478 1133 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 26 1132 - -
Cmo01g00478 1133 Gene3D Phosphorylase Kinase; domain 1 816 929 - -
Cmo01g00478 1133 Pfam Leucine rich repeat 641 700 IPR001611 GO:0005515
Cmo01g00478 1133 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Cmo01g00478 1133 ProSiteProfiles Protein kinase domain profile. 854 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00478 Cmo-Chr1:2280890 Cmo14g01912 Cmo-Chr14:14220544 1.58E-144 dispersed
Cmo15g00832 Cmo-Chr15:4220710 Cmo01g00478 Cmo-Chr1:2280890 0 transposed
Cmo01g00478 Cmo-Chr1:2280890 Cmo14g01164 Cmo-Chr14:9404275 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74025 PF00069 Pkinase 4.20E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00478 - - csv:101218045 1890.93