Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00506 ATGGAGCAAGGAGCTATTGAGCCAAAGGGCACGGCGGACATAGACAATTCAAGCTCATACAAAAAGATCATAATAGTTGCAGCCATTGCAGCCGGAATCCAATTCGGTTGGGCTCTGCAGCTCTCATTACTAACACCATACGTCCAACAACTCGGTGTTTCCCACACATGGTCAGCTTTCATTTGGCTCTGTGGTCCATTGTCCGGCCTAATTGTACAGCCAACCGTCGGCTACTACAGCGATCGATGCACCTCGAGGTTCGGTCGTCGTCGTCCCTTCATCGTAGCCGGAGCTATATCGGTAGCCGCCGCAGTTTTCCTCATTGGCTTTGCAGCAGACATTGGGCATTCACTAGGAGATCAACTCACCAAACCCACAAAACCAAGGGCGGTGGCTATCTTCGTGGTCGGATTTTGGGTTCTTGATGTCGCTAACAACATGTTACAAGGCCCTTGTCGAGCTTTGTTAGCTGATATGTCATGTACCAACCAAAAGAAAATGAGGGTCGCTAATGGATTCTTCTCATTCTTTATGGGCGTAGGGAATGTCTTAGGGTATGCAGCAGGGTCCAATAGCTCACTCTATAAGCTCCTTCCATTTACCATCACTGAAGCTTGTGATGCATATTGCGCTAATCTCAAGACATGTTTTTTAATCGACATTGTCTTGCTGCTAACCATTACAACAGCCGCCGTGTTGTTAGTGAGCGAGAGGCCTTATGAGAACGCTATGGACAACGAAACAGAGCCGTTTTTTGGGCAATTGTGTGGGGCGCTCAAGCGGCTATCAAAGCCCATGTGGGTGTTGTTGCTTGTCACAGCGTTGAATTGGATTGGTTGGTTTCCTTTTATAATGTATGACACGGATTGGATGGGCGCTGAAGTGTATGGTGGCAAGCCACAGGGGACGCCAGAACAAGAGAAGAATTATGACCTTGGTGTGCGAGCAGGGGCGCTTGGATTGATGGTTAACTCATTTGTTCTTGGGTTTACAGCATTGGGTATTGAGCCAATTAGCCGTGTGGTTGGTGGGCTAAGATGGGTTTGGGGAATTGTGAACGTTGTATTGGCAATTTGTATGGGGTGTACGGTGGCTGTGACGAAGGCGGCAGAGAAATGGAGGGCTGTTCACGGCGGCTTGGCGCTTCCTCCGCCGGGTGTTAAAGGTGGTGCCTTTGCGATCTTTGCGATATTGGGTGTTCCACTATCGGTGACTTATAGTGTTCCATTTGCTCTTGCGTCGATCTTTTCGTTGTCATCGAATGCAGGGCAAGGGCTGTCTTTGGGGATTTTGAATCTGTTTATAGTGATACCGCAGTTCTTTGTGTCGGCTGTTAGTGGGCCGCTTGATGCTGCTCTTGGAGGGGGGAATTTGCCGGCTTTTGTTATGGGGGGGATTGCTGCGGCTGTGAGTGCTGTGTGCGCTATGTTTTTGCTTCCTGATCCGCCGCCGGAGACTCATGTTGCTGTCACGATGGGCGCCGGGCATTGA 1491 49.77 MEQGAIEPKGTADIDNSSSYKKIIIVAAIAAGIQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGAISVAAAVFLIGFAADIGHSLGDQLTKPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCTNQKKMRVANGFFSFFMGVGNVLGYAAGSNSSLYKLLPFTITEACDAYCANLKTCFLIDIVLLLTITTAAVLLVSERPYENAMDNETEPFFGQLCGALKRLSKPMWVLLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPQGTPEQEKNYDLGVRAGALGLMVNSFVLGFTALGIEPISRVVGGLRWVWGIVNVVLAICMGCTVAVTKAAEKWRAVHGGLALPPPGVKGGAFAIFAILGVPLSVTYSVPFALASIFSLSSNAGQGLSLGILNLFIVIPQFFVSAVSGPLDAALGGGNLPAFVMGGIAAAVSAVCAMFLLPDPPPETHVAVTMGAGH 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2439390 2440880 + CmoCh01G005060.1 Cmo01g00506 373989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00506 496 CDD MFS_SLC45_SUC 34 477 - -
Cmo01g00506 496 SUPERFAMILY MFS general substrate transporter 22 485 IPR036259 -
Cmo01g00506 496 Pfam MFS/sugar transport protein 28 279 - -
Cmo01g00506 496 TIGRFAM GPH_sucrose: sucrose/H+ symporter 19 483 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cmo01g00506 496 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 20 489 - -
Cmo01g00506 496 PANTHER SUGAR TRANSPORTER 20 489 - -
Cmo01g00506 496 Gene3D MFS general substrate transporter like domains 16 487 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00901 Cmo-Chr5:6793450 Cmo01g00506 Cmo-Chr1:2439390 2.43E-134 transposed
Cmo12g00183 Cmo-Chr12:1194417 Cmo01g00506 Cmo-Chr1:2439390 1.91E-159 transposed
Cmo12g00675 Cmo-Chr12:4526412 Cmo01g00506 Cmo-Chr1:2439390 8.20E-139 transposed
Cmo01g00506 Cmo-Chr1:2439390 Cmo05g00870 Cmo-Chr5:5771453 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00506 K15378 - csv:116401998 775.007