Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00512 ATGAAAAACCTTTCTTCATCTACTTGCTCTTGTTGTCGTCGTGGTCGTCATTTGTATGTGCCAACATTTTCCCTCAGCTTTTTGTCATCTTCCAAAGCTAGGCACCGGCTTTGCCTTGCATTGGGGGCACTGATGGATGAAGAGGCAATTTATAAGGAACCTCCGATTCCCACATCCATGGCCTCCGATTCCAACTCCCCTGAAATCTCCTCTGTTTTCGACACCCTCATCGGAAACAGAGACCTCTCTCTCTTCATGCCCGTCCTCTTCGGCTTCTCCGCCGCCGACCCACTTCAACAATCCCAAAACCCCGCCGACCCAGATCGCCAAAACGCCAATCGGAGCGACAGGATATTTCTGGTCAACCCTTTTACTCAGAGCATGGTCGTGATCGAGGGGCGTTCGAGCTTGGAAGCACTGATGCGTGATCTCGGCGGGAAGGACGGCCAGCCGCCGGCGTCCAGAGCATCCATAGAAGCGCTCCCCACCGTTCAAATCATGGCAGAGGAGTCGGGTTGTGAGTGTGTGATCTGCTTGGATGAGTGGAAGATTGGGGCGGTGGCTAAAGAACTGCCCTGCGGACACAAATTTCATCCCGACTGTATAGAGAAATGGCTTGGGATTCATGGGAATTGCCCTCTTTGTAGGTGCAAGCTGCCGGATGATGTTGATCGGAAGAACAACGAGGGGCGGCGGGCGAGGGAGATTTGGGTCGGTTTTTCTTTCAATAATGATCGGAGAAGTGAGGGTTCTAATGGAGTTTCTTCAGATCATGGAGCTTAG 783 52.23 MKNLSSSTCSCCRRGRHLYVPTFSLSFLSSSKARHRLCLALGALMDEEAIYKEPPIPTSMASDSNSPEISSVFDTLIGNRDLSLFMPVLFGFSAADPLQQSQNPADPDRQNANRSDRIFLVNPFTQSMVVIEGRSSLEALMRDLGGKDGQPPASRASIEALPTVQIMAEESGCECVICLDEWKIGAVAKELPCGHKFHPDCIEKWLGIHGNCPLCRCKLPDDVDRKNNEGRRAREIWVGFSFNNDRRSEGSNGVSSDHGA 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2463141 2464896 + CmoCh01G005120.1 Cmo01g00512 373995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00512 260 CDD RING-H2_PA-TM-RING 174 216 - -
Cmo01g00512 260 Pfam Ring finger domain 174 216 IPR001841 -
Cmo01g00512 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 70 230 - -
Cmo01g00512 260 SUPERFAMILY RING/U-box 169 222 - -
Cmo01g00512 260 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Cmo01g00512 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 222 IPR013083 -
Cmo01g00512 260 SMART ring_2 175 215 IPR001841 -
Cmo01g00512 260 PANTHER - 70 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00512 Cmo-Chr1:2463141 Cmo15g00280 Cmo-Chr15:1337886 1.16E-29 dispersed
Cmo01g00512 Cmo-Chr1:2463141 Cmo18g01167 Cmo-Chr18:11822878 8.25E-48 wgd
Cmo01g00512 Cmo-Chr1:2463141 Cmo04g01742 Cmo-Chr4:8810389 2.18E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00512 - K11982 zju:107429014 246.128