Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00515 ATGGAGTTTCATATGCTCTTTCCGGTGGTTTTTTTCTCACTCCTTTCGTCCACCGCGGCAGTCGGCGAATGGACCAACGCCCACGCCACCTTCTACGGCGGCAGCGATGCTTCTGGGACAATGGGCGGAGCTTGTGGGTATGGGAATCTGTACAGTCAAGGGTTCGGTGGGAACACCGCCGCTGTTAGCACTGCCCTGTTCAACAATGGGCTGAGCTGCGGGTCTTGCTATGAGATCAAGTGCGTGGACGACCCTCAATGGTGTCTTCCAGGCTCTGTTTTGGTCACCGCCACCAATTTCTGTCCGCCCAATAACGCCCTTCCCAACACCGCCGGCGGCTGGTGCAACCCTCCTCTGCACCATTTTGACCTCGCCCAACCTGTGTTCCTCCACATTGCCCAATACCATGCCGGAATCATCCCCGTCGCTTATCGGAGGGCTCCGTGCAAAAGAAGGGGAGGAATAAGGTTCACAATCAACGGCCATTCCTACTTCAATTTGGTGCTAATAACCAATGTGGGCGGCGCCGGAGATGTCCGGGCAGTGTCGATTAAAGGGGCGAGAAGTGGGTGGCAGTCAATGTCGAGAAATTGGGGGCAGAATTGGCAGAGCAACAACTTTTTGGATGGTCAACCCCTCTCTTTTAGGCTCACCACTAGCGACGGCCGAACACTTGTTTCTAGAAACGTGGCTCCGGCCGGTTGGTCCTTTGGCCAGACCTTCACCGGCCGTCAATTCCGGTGA 744 55.78 MEFHMLFPVVFFSLLSSTAAVGEWTNAHATFYGGSDASGTMGGACGYGNLYSQGFGGNTAAVSTALFNNGLSCGSCYEIKCVDDPQWCLPGSVLVTATNFCPPNNALPNTAGGWCNPPLHHFDLAQPVFLHIAQYHAGIIPVAYRRAPCKRRGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGARSGWQSMSRNWGQNWQSNNFLDGQPLSFRLTTSDGRTLVSRNVAPAGWSFGQTFTGRQFR 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2473671 2474713 - CmoCh01G005150.1 Cmo01g00515 373998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00515 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Cmo01g00515 247 PANTHER EXPANSIN 9 246 - -
Cmo01g00515 247 PANTHER EXPANSIN-A15 9 246 IPR002963 GO:0009664
Cmo01g00515 247 SUPERFAMILY Barwin-like endoglucanases 23 172 IPR036908 -
Cmo01g00515 247 SMART dpbb_1 59 144 IPR007112 -
Cmo01g00515 247 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Cmo01g00515 247 Gene3D - 10 150 IPR036908 -
Cmo01g00515 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Cmo01g00515 247 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Cmo01g00515 247 Gene3D - 154 246 IPR036749 -
Cmo01g00515 247 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Cmo01g00515 247 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Cmo01g00515 247 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Cmo01g00515 247 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Cmo01g00515 247 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Cmo01g00515 247 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Cmo01g00515 247 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Cmo01g00515 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Cmo01g00515 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Cmo01g00515 247 Pfam Lytic transglycolase 59 144 IPR009009 -
Cmo01g00515 247 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Cmo01g00515 247 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Cmo01g00515 247 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Cmo01g00515 247 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Cmo01g00515 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Cmo01g00515 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00515 Cmo-Chr1:2473671 Cmo10g00214 Cmo-Chr10:951009 7.22E-134 dispersed
Cmo01g00515 Cmo-Chr1:2473671 Cmo18g01159 Cmo-Chr18:11792230 2.33E-130 wgd
Cmo01g00515 Cmo-Chr1:2473671 Cmo04g01748 Cmo-Chr4:8826880 8.66E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00515 - K20628 csv:101202833 446.432