Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00519 ATGGGGTCCTGCTTGTCTGCGGAAAGCAGGAGCCCCATTCCTGGTTCCCCGACCTCTCCGGCTAAGCACTATCATCGAAGCAGGAGCAAGAGACGAAATGGTTCTCGGAGTTCTTCCTTTGGGGATCTGTCTCTCCATCGGATCCCTGGTAGGGTGTTCGGCAATGGCTTCACTGATTTCGCCTCTTTGTTTACGCAGCAGGGCAAGAAAGGAACCAATCAGGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTCGATGGCCACGGCCCATACGGTCATATGGTTGCGAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTAAGTACACATTGGGAGGTCAACTTGACCACAGATGATGTTCTTAGAGAGATAAGCCTCAATACTGGAAGTGTGAACTCAGATGAAGCTACCTCCTTTTTATCTGCTGATGAAGAGTTTAGGGCATCCACTGATGGTGATGGAGCAGAAAAGCAACCTGAAATTTTCCATGCCTTGAAGGAATCATTTCTTAAGGCTTTTAGGGTTATGGATAGGGAACTCAGAATGCACCAAGGTATAGATAGCTTCTGTAGTGGGACAACAGCAGTGACTATGGGTCAGGATCTTGTCATTGGAAACGTTGGGGACTCCCGAGCTGTTCTGGGTACGAGAGATAAAGATGACTCTCTTGTTGCAATTCAATTGACTGTGGATCTGAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAGAGGTCGTGTCTTTGCTCTCCACGACGAACCTGATGTTCCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGAGCATTCGGAGATTTCTGCCTCAAAGACTTTGGTCTAATCTCTGTACCTGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTGCTATCAAACAAAGAGGTTGTAAATGTCGTTGCATCGGCTCCAAAACGCTCTACTGCAGCTCGAACTTTAGTTGAGACAGCCGTGAAAGCATGGAAATATAAGTACCCAACTTCCAAGATTGATGACTGTGCGGTTGTTTGCCTTTTTCTTGACTCGAACTCCGGAAATCTATCATCTGCTTCCAATACCAAACCAGAGGTGCAACAAAGTTTAATAGATCACATCAGCAGTGCAGTTGAGAGTGAAGATTTCTCTAGCCCAAATGGTCTGAATCATTTGGGAACCGTCCAAATCTGCAAGGAAACTCCGGAGGATGGAAGCGAAGAAGAAGATGAATCGAAGGAGGAAGAACATTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGCGTCTCACGCGTAAATACTCTGGTAAACCTGCCGAGATTCGATCCTGGAAAAGAAGATAAGAAAGGGCGGAATGATACCTGTGCTTCCATGACTAATGACGAGGGCATACCAGAGTTGCAGAGCTCTAAGATTCTACGAGACATAGGATTCTAA 1521 46.22 MGSCLSAESRSPIPGSPTSPAKHYHRSRSKRRNGSRSSSFGDLSLHRIPGRVFGNGFTDFASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSTHWEVNLTTDDVLREISLNTGSVNSDEATSFLSADEEFRASTDGDGAEKQPEIFHALKESFLKAFRVMDRELRMHQGIDSFCSGTTAVTMGQDLVIGNVGDSRAVLGTRDKDDSLVAIQLTVDLKPNLPAEAERIRKCRGRVFALHDEPDVPRVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVNVVASAPKRSTAARTLVETAVKAWKYKYPTSKIDDCAVVCLFLDSNSGNLSSASNTKPEVQQSLIDHISSAVESEDFSSPNGLNHLGTVQICKETPEDGSEEEDESKEEEHSEMGIEWSALEGVSRVNTLVNLPRFDPGKEDKKGRNDTCASMTNDEGIPELQSSKILRDIGF 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2498314 2502370 - CmoCh01G005190.1 Cmo01g00519 374002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00519 506 ProSiteProfiles PPM-type phosphatase domain profile. 60 376 IPR001932 -
Cmo01g00519 506 MobiDBLite consensus disorder prediction 1 42 - -
Cmo01g00519 506 MobiDBLite consensus disorder prediction 1 16 - -
Cmo01g00519 506 Gene3D - 60 378 IPR036457 -
Cmo01g00519 506 SUPERFAMILY PP2C-like 58 377 IPR036457 -
Cmo01g00519 506 PANTHER ALPHABET, ISOFORM E-RELATED 1 465 - -
Cmo01g00519 506 MobiDBLite consensus disorder prediction 428 449 - -
Cmo01g00519 506 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 465 - -
Cmo01g00519 506 MobiDBLite consensus disorder prediction 469 483 - -
Cmo01g00519 506 MobiDBLite consensus disorder prediction 465 506 - -
Cmo01g00519 506 Pfam Protein phosphatase 2C 153 354 IPR001932 -
Cmo01g00519 506 CDD PP2Cc 60 376 IPR001932 -
Cmo01g00519 506 SMART PP2C_4 49 374 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00519 Cmo-Chr1:2498314 Cmo11g00953 Cmo-Chr11:5012030 1.18E-168 dispersed
Cmo05g01107 Cmo-Chr5:8818065 Cmo01g00519 Cmo-Chr1:2498314 1.57E-115 dispersed
Cmo01g00519 Cmo-Chr1:2498314 Cmo05g00859 Cmo-Chr5:5570993 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00519 - - csv:101222150 808.905