Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00536 ATGGAACATAGTTATGGGTTTGAACAGCATGTTGCTCAACAAAGCCGGCGTGATAAGCTAAGAGTTCCGCAGAATTATTTGCGAGTAGTGGGGGAATTATCCAGTAACTCTGGCGAACAATTGGGTTTTCAGAACTCGGTGCATTCGGGGCTTGATCTGGATCTTGTTCGAATTCAAAGTTTTAATAAGAATGCGATTTTGCCTCATGATTTGTCTTCTTTTCCGGCAGAGATGATTAATTTTTCAAGGGATTCCAACGTTTTATCGGACCAAAGGCACATAATGTTGCGTCAAGAGCCAGAAGACCCTGCTCAATGCAGTAGGCAAATTCTGGCAGATGCTTCGTTGGGTTCTTTTGCCAACTCTTTGTTGAAAGCCTCTGGGGAAATTATGAATAATTCTTTGGGAGATTGGGTGGTGAACTGTGGAAGTAATTCTTTGGGAGGTGAAATGTTGAATGAGGAAGTAACGGATTCTACTGTATATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCAACCTCTTTTAACAATCCATCCAACGAAGCATTCATTCAGGATGGACAAAAGCGTGTAGCAGGAGAATTGCATTTGCCTCCAATTTACCAAAATAGTCTTCAGGGTGTTACTTCAGCCTCTATTGGAACTCAGGACATGGAAATGACATCCATCGTGCAGCATAATTTCACTGAAATTAACCAAACTGGTTCTTGTGAAGGCAGTGGAAATGAGCTTGCTCTTCTTCCTGTGTACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACAGATAGAACTTTCTATAACTGCCGCAGCTGGACTGGCGAATTGGGTTCAATTGCAAGAAAAACTGGTGAAGAATTGAGAACTTTTATGAGTGATTCCAATCCACAAGGTCTATCTCTGTCGCTTTCTTCGAATCCGCCATCTAAACTGCCCACCGCACAGTTTGAAGAATCAGAGGAATTACAGGAAAATATGACCGTGTTGAAAAATCCACAAGAATCCAAATCTGGCAAATCTGAGAGTTTTTGTAGATTACCAAACCCAACATCTATTGGCAATAAAAATCATGGGAAATCTCTTCAAGACGCGATGGGAGCTCCTATGAACACATATAGAAACACAGGGCCTCTTGGTCCCTTTACTGGTTATGCGACCATTTTAAAGAGTTCAAAATTCTTGAAGCCAGCCCAATTATTGTTGGACGAATTTTGTGGCTCGAATGGTCAAAAGTTTGTCCAACCATATGAAGTATTTGAGAAGACATCTGGGGAAGTTGGTCCCTCAGCGGTCCATAGTGCATTTAGAAACGAGGTTTTTAAAGAGAATAGTTCATGTGCTGAAGCCTCTACGTTCTGTGGTTCGAATGAGACAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCAGAGTATCAGCAAAAGAAAGCGAAACTTCTATATATCCTAGAGGAGGTTCGTTGCATTAGAACACTTGATTATAACTTTTTCTTAGCGCTTCCTATTATTGCTAAATGGCGAATGGCTGAAGCTGTTTTGCCATTGTTGGCGCGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTCTCATCCTTTGAATCAGTAGCTGGTCTTAGTTCTGCCACACCCTATATTTCCCTGGCGCTCAAGACAGTCTCTAGGCACTTCCGCTGTCTGAAGAACGCCATCTCAGAACAATTGAAGTATCTGAGGAAGGTATTAGGTGAGGATTTGTCATCCCCCTCCGCTGGGACAAGCGGCAGCAAAGGTGATGCGAATTCGGCTAGGTTGAAATACATGGAACAGAGCTTCCAAAAGCAAAAATCTGGCATGGTCAATATGGGATTCCTCGAATCCCAACATGTGTGGAGGCCGCAGAGAGGTCTTCCAGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCGTACCCCACAGACACAGATAAGCACATGTTAGCCACTCAAACAGGCCTGTCTCGTAATCAGACTTCTTTTTGGTGGAAGGTGGTGTTTAATTTAGTTGTTAGTATAGTTTGTTTTGCTATTTTGCTTCCTTCTGCTTGCTCTGTAGCATTAAGTAGGATGCCGTTGCCCTTCCTCAAATTATTGCTTTTCACCTTGCAATTATCGTTTAAATACAAGTATTGCTTGATTTATCACATATTGTCATGGTGTCGATTGGATGATGATTACAATGTGTCAAATTGGTTCATAAATGCTCGAGTGCGAGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTGGAAACTAAGGGCATGGCCGAAATGAACAACAAAAGCCATGGTACGAAAGATGGTAGTTCTACAATAGAAAACACAGCCGGTTGGATCAGTAGTGAACAACAGCCTCTAAAAAACCATGGTGTTGCAAATGAAATTGCCAGTCATCATCTGCAGTGCTTGGGGGTGGATTCCTCAAGTGGCGATAGAAATGGAGTAGGCAGTAGCAACCAACAGTGTGATCAAGACAAACAATCCAAATTGGACCGAGGGATTCAGTCCAACATGGAAGGGGAATTGATGGGGTTCATGCCATATCGAGCCAGTCCGGCTGAGGTTGGAGGACTTGGATCTGTCTCTCTAACATTAGGACTTCGCCACCGAGTTGAGAGTGCCCACCATCAACAGCAGCATCACCAATTGCAGCAACAAGATGACCAACTAATACGCCACTATGGAGGCCAAATGATCCATGATTTTGTGGGGTAA 2781 43.04 MEHSYGFEQHVAQQSRRDKLRVPQNYLRVVGELSSNSGEQLGFQNSVHSGLDLDLVRIQSFNKNAILPHDLSSFPAEMINFSRDSNVLSDQRHIMLRQEPEDPAQCSRQILADASLGSFANSLLKASGEIMNNSLGDWVVNCGSNSLGGEMLNEEVTDSTVYSLKPTCIGFQTSTSFNNPSNEAFIQDGQKRVAGELHLPPIYQNSLQGVTSASIGTQDMEMTSIVQHNFTEINQTGSCEGSGNELALLPVYRDQPNVLPYDSTGSWTDRTFYNCRSWTGELGSIARKTGEELRTFMSDSNPQGLSLSLSSNPPSKLPTAQFEESEELQENMTVLKNPQESKSGKSESFCRLPNPTSIGNKNHGKSLQDAMGAPMNTYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGQKFVQPYEVFEKTSGEVGPSAVHSAFRNEVFKENSSCAEASTFCGSNETNVSGVGSISSESHQPEYQQKKAKLLYILEEVRCIRTLDYNFFLALPIIAKWRMAEAVLPLLARRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRCLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYMEQSFQKQKSGMVNMGFLESQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQTSFWWKVVFNLVVSIVCFAILLPSACSVALSRMPLPFLKLLLFTLQLSFKYKYCLIYHILSWCRLDDDYNVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGTKDGSSTIENTAGWISSEQQPLKNHGVANEIASHHLQCLGVDSSSGDRNGVGSSNQQCDQDKQSKLDRGIQSNMEGELMGFMPYRASPAEVGGLGSVSLTLGLRHRVESAHHQQQHHQLQQQDDQLIRHYGGQMIHDFVG 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2636510 2639805 - CmoCh01G005360.1 Cmo01g00536 374019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00536 926 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 684 - -
Cmo01g00536 926 MobiDBLite consensus disorder prediction 829 852 - -
Cmo01g00536 926 CDD homeodomain 634 683 IPR001356 GO:0003677
Cmo01g00536 926 SMART prehox3 388 576 IPR006563 -
Cmo01g00536 926 Pfam Homeobox KN domain 651 683 IPR008422 GO:0003677|GO:0006355
Cmo01g00536 926 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 750 893 - -
Cmo01g00536 926 SUPERFAMILY Homeodomain-like 629 684 IPR009057 -
Cmo01g00536 926 MobiDBLite consensus disorder prediction 297 318 - -
Cmo01g00536 926 Gene3D - 637 689 - -
Cmo01g00536 926 Gene3D - 719 769 - -
Cmo01g00536 926 MobiDBLite consensus disorder prediction 829 846 - -
Cmo01g00536 926 Pfam Associated with HOX 393 575 IPR006563 -
Cmo01g00536 926 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 750 893 - -
Cmo01g00536 926 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 75 684 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00536 Cmo-Chr1:2636510 Cmo02g00381 Cmo-Chr2:1948698 1.13E-64 dispersed
Cmo01g00536 Cmo-Chr1:2636510 Cmo13g00245 Cmo-Chr13:2012539 2.48E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00536 - - cmax:111493386 1258.43