Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00546 ATGGCTTCCTTATCAATGGCTACCATTTTACCCCGTCTATCTCGTTTGGGGTTTGCGTCGAGATTTTCTTTAAACCCATTGTTTATGCTCCCCAAAAGTAGTAGAATCGAGAGATTGAATCGATTGAGACCCTTTTCGATGGCTTCGGTTCCTAAAGAATCTCCCGCAAACAATCCGGGACTTCACGCAACCCCCGACGATGCCACTAAAGGTTACATCATGCAACAGACTATGTTCCGGATTAAGGATCCTAAAGCCAGTCTTGACTTCTATTCTCGAGTTCTGGGCATGTCATTACTCAAGAGGCTGGATTTTCCTGAAATGAAGTTTAGCTTATACTTCTTGGGTTATGAGGATGTTGCTTCTGCCCCAGACAACGCAGTTGATAGAACGGTCTGGACTTTTGGTCGGAAGGCTACAATTGAGTTAACACACAACTGGGGTACTGAAAGTGACCCTGAATTTAAAGGATATCATAATGGGAACTCGGATCCTCGTGGCTTTGGACACATTGGTATAACTGTTGATGACACGTATAAGGCGTGCGAGAGATTTGAACGCCTAGGAGTGGAATTTGTTAAAAAACCAGATGACGGCAAGATGAAAGGTATTGCATTTATAAAGGATCCTGATGGCTACTGGATTGAAATCTTCGACCTCAAACTCATCGGAAACGTGACTACTAATGCTGCTTGA 696 43.68 MASLSMATILPRLSRLGFASRFSLNPLFMLPKSSRIERLNRLRPFSMASVPKESPANNPGLHATPDDATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDVASAPDNAVDRTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDTYKACERFERLGVEFVKKPDDGKMKGIAFIKDPDGYWIEIFDLKLIGNVTTNAA 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2702069 2705392 - CmoCh01G005460.1 Cmo01g00546 374029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00546 231 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 73 220 IPR037523 -
Cmo01g00546 231 TIGRFAM glyox_I: lactoylglutathione lyase 62 225 IPR004361 GO:0004462|GO:0046872
Cmo01g00546 231 PANTHER LACTOYLGLUTATHIONE LYASE 33 227 - -
Cmo01g00546 231 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 64 218 IPR029068 -
Cmo01g00546 231 ProSitePatterns Glyoxalase I signature 2. 161 177 IPR018146 GO:0004462|GO:0046872
Cmo01g00546 231 PANTHER LACTOYLGLUTATHIONE LYASE GLYOXALASE I 33 227 - -
Cmo01g00546 231 CDD GlxI_Zn 74 218 - -
Cmo01g00546 231 Gene3D - 50 223 IPR029068 -
Cmo01g00546 231 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 76 217 IPR004360 -
Cmo01g00546 231 ProSitePatterns Glyoxalase I signature 1. 76 97 IPR018146 GO:0004462|GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00546 Cmo-Chr1:2702069 Cmo11g00637 Cmo-Chr11:3063905 1.48E-12 dispersed
Cmo01g00546 Cmo-Chr1:2702069 Cmo05g01362 Cmo-Chr5:10534004 8.95E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00546 K01759 - mnt:21403510 380.178