Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00547 ATGGAGAAATCTGGATATGGTCGCGATGGAATTTTCAGGTCCTTACGGCCTCCGATCGTCTTTCCCAGAGATCCCAATTTGTCGGTGGCCTCTTTTCTTTTCCGAAACTCATCGTCTTATCCAAACAGACTCGCCATAGTTGATGCGGAATCTTCTGATTCCGTGTCGTATTCCCAGCTTAAAGCCTCTGCAATTAAGATCTCCAATGGTTTGCTCCAATTGGGTATTGAGAAAAACGACGTGGTGATGATTTTTGCTCCAAATTCTGTTGAATTCTCCATTTGTTTCATTGGAATTGTTGCTATTGGGGCTATTGTCACCACTTGTAATCCTGTTTACATGGTCTCTGAGTTAACCAAGCAAGTTAGAGATGCTAAGCCCAAACTTATGATATCTGTTGTTGAATTGTGGGACAAAGTGAAGGATCTAAACATCCCAACAGTGTTACTAGACCAGCAAATTCCTTCGGAAATCCAGTCCTCCAAAATTTTATGTTTCAATGATTTGATAAACATGGCTGGCGATAAATCTGGCTCCGAATTCCCAATTGTTGGGGTGAAGCAGAGTGATACAGCTGCTCTTCTGTATTCATCAGGAACAACAGGAGCCAGTAAGGGTGTGATTCTGACTCACAGAAACTTCATAACATCTTCACTGATGATAACATTGGATCAGAAGACTAATGGAGACGAAAATGGCACATATCTGAACTTTTTGCCGATGTTTCATGTGTTTGGATTGGTTTGTATAACATGTGCGCAGCTGCAGAGAGGAAACACCATTGTCTCTATGCCAAAGTTTAACCTGGAGAAGGCCCTGTGGGCAGTGGAGAAGTACAAGGTGACAGATCTGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCAAAGCAAAGTGTGGTAAAGAAATACAACCTTTCATCCCTGAAGCATATCGGTTCAGGGGCTGCACCTCTTGGGAAGGAATTAATGGATGAATGTGCTAACAACATTCCCAGTGCTGTGGTTCTCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTTTCTTTGGAGAATCGAACAGTTGGCAAACGAAATACGGGTTCGGCTGGAACACTTGCCTCTGGTGTTGAGGCTCAAATAGTCAGCGTAGATACTTTGAAGCCTCTTCCTCCTAATCAATATGGAGAGATACTGGTTCGGGGACCGAATATGATGCTTGGTTACTTAAACAATCCACAGGCCACCAAGCAAACTATTGACAAATATGGCTGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAATGGTCAGCTTTATGTTGTCGACAGAATTAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCCGAGCTTGAAGCACTGTTGGTCTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTACCCCGACGATGAAGCTGGAGAAGTTCCAATCGCATATGTCGTGCGATCTACCAATAGTTCTATGACCGAAGAGGACGTCCTCAAATTCGTGGCCGATCAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTGACATTCATCAACAGTGTCCCCAAGTCAGTTTCTGGGAAAATCCTGAGGAGAGAACTCATTGAGAAAGTAAGAGCTAAACTCTAA 1632 43.93 MEKSGYGRDGIFRSLRPPIVFPRDPNLSVASFLFRNSSSYPNRLAIVDAESSDSVSYSQLKASAIKISNGLLQLGIEKNDVVMIFAPNSVEFSICFIGIVAIGAIVTTCNPVYMVSELTKQVRDAKPKLMISVVELWDKVKDLNIPTVLLDQQIPSEIQSSKILCFNDLINMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFITSSLMITLDQKTNGDENGTYLNFLPMFHVFGLVCITCAQLQRGNTIVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSVVKKYNLSSLKHIGSGAAPLGKELMDECANNIPSAVVLQGYGMTETCGVVSLENRTVGKRNTGSAGTLASGVEAQIVSVDTLKPLPPNQYGEILVRGPNMMLGYLNNPQATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDDEAGEVPIAYVVRSTNSSMTEEDVLKFVADQVSPYKRLRRVTFINSVPKSVSGKILRRELIEKVRAKL 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2706399 2709738 + CmoCh01G005470.1 Cmo01g00547 374030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00547 543 Gene3D - 441 542 IPR045851 -
Cmo01g00547 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Cmo01g00547 543 CDD 4CL 21 535 - -
Cmo01g00547 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cmo01g00547 543 Gene3D - 10 440 IPR042099 -
Cmo01g00547 543 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 541 - -
Cmo01g00547 543 Pfam AMP-binding enzyme 35 445 IPR000873 -
Cmo01g00547 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
Cmo01g00547 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 541 - -
Cmo01g00547 543 Coils Coil 536 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00547 Cmo-Chr1:2706399 Cmo14g00216 Cmo-Chr14:997716 0 dispersed
Cmo03g01448 Cmo-Chr3:10476073 Cmo01g00547 Cmo-Chr1:2706399 2.11E-28 dispersed
Cmo14g01057 Cmo-Chr14:5785268 Cmo01g00547 Cmo-Chr1:2706399 1.24E-140 dispersed
Cmo15g01155 Cmo-Chr15:8077062 Cmo01g00547 Cmo-Chr1:2706399 1.14E-59 dispersed
Cmo01g00547 Cmo-Chr1:2706399 Cmo09g00069 Cmo-Chr9:306661 1.23E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00547 K01904 - csv:101220141 959.133