Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g00564 | ATGGAGTGCAGTGACGCAAAATCCGGTCCAACTTCAATCATCCTCCGGTCTCAGTCGTCGCCGCCGCCGCCGCCACCTTGTGTCCAGGCCGGCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTTTTTGGTGCTAGCAATATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGAGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGGTGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCCGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAGCTAACTCAAACGCCGGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCACTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATAGCAATATCTGGGAGGCTCTCTGGACATGA | 591 | 52.28 | MECSDAKSGPTSIILRSQSSPPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSYPLFDDSNIWEALWT | 196 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2827611 | 2829136 | + | CmoCh01G005640.1 | Cmo01g00564 | 374047 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g00564 | 196 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 18 | 195 | - | - | |
| Cmo01g00564 | 196 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cmo01g00564 | 196 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 18 | 195 | - | - | |
| Cmo01g00564 | 196 | ProSiteProfiles | LOB domain profile. | 35 | 136 | IPR004883 | - | |
| Cmo01g00564 | 196 | Pfam | Lateral organ boundaries (LOB) domain | 36 | 133 | IPR004883 | - | |
| Cmo01g00564 | 196 | Coils | Coil | 122 | 142 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g00564 | Cmo-Chr1:2827611 | Cmo15g00444 | Cmo-Chr15:2017329 | 4.53E-53 | dispersed | |
| Cmo01g00564 | Cmo-Chr1:2827611 | Cmo13g00196 | Cmo-Chr13:1406230 | 6.44E-101 | wgd | |
| Cmo01g00564 | Cmo-Chr1:2827611 | Cmo02g00870 | Cmo-Chr2:5297039 | 1.03E-73 | wgd | |
| Cmo01g00564 | Cmo-Chr1:2827611 | Cmo02g00870 | Cmo-Chr2:5297039 | 1.03E-73 | wgd | |
| Cmo01g00564 | Cmo-Chr1:2827611 | Cmo20g00502 | Cmo-Chr20:2396456 | 1.14E-76 | wgd | |
| Cmo01g00564 | Cmo-Chr1:2827611 | Cmo04g00277 | Cmo-Chr4:1399587 | 1.79E-70 | wgd | |
| Cmo01g00564 | Cmo-Chr1:2827611 | Cmo04g01315 | Cmo-Chr4:6708105 | 5.43E-72 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9039 | PF03195 | LOB | 7.70E-41 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g00564 | - | - | csv:101222262 | 291.967 |