Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00564 ATGGAGTGCAGTGACGCAAAATCCGGTCCAACTTCAATCATCCTCCGGTCTCAGTCGTCGCCGCCGCCGCCGCCACCTTGTGTCCAGGCCGGCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTTTTTGGTGCTAGCAATATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGAGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGGTGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCCGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAGCTAACTCAAACGCCGGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCACTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATAGCAATATCTGGGAGGCTCTCTGGACATGA 591 52.28 MECSDAKSGPTSIILRSQSSPPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSYPLFDDSNIWEALWT 196
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 2827611 2829136 + CmoCh01G005640.1 Cmo01g00564 374047
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00564 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 195 - -
Cmo01g00564 196 MobiDBLite consensus disorder prediction 1 25 - -
Cmo01g00564 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 18 195 - -
Cmo01g00564 196 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Cmo01g00564 196 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Cmo01g00564 196 Coils Coil 122 142 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00564 Cmo-Chr1:2827611 Cmo15g00444 Cmo-Chr15:2017329 4.53E-53 dispersed
Cmo01g00564 Cmo-Chr1:2827611 Cmo13g00196 Cmo-Chr13:1406230 6.44E-101 wgd
Cmo01g00564 Cmo-Chr1:2827611 Cmo02g00870 Cmo-Chr2:5297039 1.03E-73 wgd
Cmo01g00564 Cmo-Chr1:2827611 Cmo02g00870 Cmo-Chr2:5297039 1.03E-73 wgd
Cmo01g00564 Cmo-Chr1:2827611 Cmo20g00502 Cmo-Chr20:2396456 1.14E-76 wgd
Cmo01g00564 Cmo-Chr1:2827611 Cmo04g00277 Cmo-Chr4:1399587 1.79E-70 wgd
Cmo01g00564 Cmo-Chr1:2827611 Cmo04g01315 Cmo-Chr4:6708105 5.43E-72 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9039 PF03195 LOB 7.70E-41 No_clan Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00564 - - csv:101222262 291.967