Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00581 ATGGAAAACGATTGCACGGCTGTGGAGATCAATGGCCTTCCCACCTACGATGGAAGGTACATCCTCTACAACGTTCTCGGCAACTTATTTGAGGTCTCCGCCAAGTACTCCCCTTCAATTCAGCCTGTTGGACGCGGTGCTTACGCCATTGTTTGGTACTTCTTTTCCTCCTCTTTCACGAAAGATGAGGTTGCGATAAAGAAGATAGGGAATGCTTTTGATAACTGGGTTGATACCAAGAGAACTCTTCGTGAGATTAAACTTCTATGCCATATGGACCATGAAAATATTATAAAGATCAAAGATATAATTCCTCCACCAGAAAAGGAAAAATTCAATGATGTGTATATTGTGTATGTATTAATGGACACTGACCTGCATCAGATCATTTGCTCTAGCCAAGCTCTAACAGACGATCACTGTCAGTACTTCTTATACCAGTTACTACGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAGGCAATCTGCTTCTCAATGCAAATTGCGACCTCAAGATTTGTGATTTTGGATTAGCAAGAACAACATCAGAGACGGATTTTATGACAGAATATGTTGTAACCAGATGGTATCGAGCTCCTGAGCTACTACTTAACACCTATGAATACACTGCAGCCATAGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGGTAAAGATTATGCGTAA 738 41.06 MENDCTAVEINGLPTYDGRYILYNVLGNLFEVSAKYSPSIQPVGRGAYAIVWYFFSSSFTKDEVAIKKIGNAFDNWVDTKRTLREIKLLCHMDHENIIKIKDIIPPPEKEKFNDVYIVYVLMDTDLHQIICSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPGNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTYEYTAAIDIWSVGCILMEILRREPLFPGKDYA 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2943268 2945146 - CmoCh01G005810.1 Cmo01g00581 374064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00581 245 Gene3D Phosphorylase Kinase; domain 1 20 122 - -
Cmo01g00581 245 ProSiteProfiles Protein kinase domain profile. 37 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00581 245 Pfam Protein kinase domain 40 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00581 245 SUPERFAMILY Protein kinase-like (PK-like) 40 244 IPR011009 -
Cmo01g00581 245 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo01g00581 245 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 15 245 - -
Cmo01g00581 245 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 245 - -
Cmo01g00581 245 SMART serkin_6 37 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00581 245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Cmo01g00581 245 ProSitePatterns Protein kinases ATP-binding region signature. 43 68 IPR017441 GO:0005524
Cmo01g00581 245 Gene3D Transferase(Phosphotransferase) domain 1 123 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00581 Cmo-Chr1:2943268 Cmo15g01314 Cmo-Chr15:9024086 1.37E-136 dispersed
Cmo01g00581 Cmo-Chr1:2943268 Cmo01g00584 Cmo-Chr1:2961319 8.03E-122 proximal
Cmo01g00581 Cmo-Chr1:2943268 Cmo13g00170 Cmo-Chr13:1135229 1.25E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74026 PF00069 Pkinase 3.80E-56 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00581 K04371 - csv:101218403 423.705