Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00584 ATGGCTGATGTTGGTCAGAACAACACCGGTGATTTTCCTGCTGTTCCTACCCATGGCGGTCAATATGTGCAGTATAATATCTTCGGGAATCCGTTTGAAATCACCTCCAAATATCGTCCGCCTATCATGCCTGTAGGTCGCGGCGCCTACGGAATCGTTTGTTCGATTTTGAATTCGGAGACCAACGAGATGGTTGCGGTTAAGAAGATTGCCAACGCGTTTGATAATCATATGGATGCGAAACGGACGCTCCGTGAGATCAAGCTTCTCCGGCATTTGGATCACGAAAATGTAATAGGCATAAGAGATGTGATTCCTCCTCCTGTGCGGAGAGAATTCAGTGATGTCTACATTTCCACTGAACTAATGGACACCGATCTTCACCAAATAATCCGCTCGAACCAAACTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTTAAATACATACATTCTGCAAATGTCATTCATCGGGACTTGAAACCGAGCAATCTACTGCTTAATGCGAACTGTGATCTTAAAATTTGTGACTTTGGTCTTGCTCGTCCAACTTCGGAAAATGAAAGCATGACAGAATATGTTGTTACGAGATGGTATAGGGCACCTGAGTTACTATTGAACTCTGATTATACAGCTGCTATTGATATATGGTCTGTTGGTTGCATCTATCTGGAGCTTATGAATAGAAGGCCTCTATTTCCAGGCAGGGATCATGTGCATCAGATGCGTTTACTGACTGAGCTTCTTGGCACACCAACCGAATCGGATCTTGGTTTCATTCGAAACGAAGACTCGAAGAGATATCTTCGGCAGCTACCTCCACATCCTCGTCAGCCATTAGCAACAGTTTTCCCTCATGTTCATCCTTTGGCAATTGATCTTGTGGATAGAATGTTGACGTTTGATCCAACCAGGAGAATTACTGTTGAAGAAGCATTGGCACATCCATACCTAGAGAGACTGCACGACGTAGCTGATGAGCCAGTTTGCCCCGTGCCATTCTCGTTCGAGTTTGAGCAACAATACCTGGATGAAGAGCAGATGAAGGAGATGATTTACAGAGAAGCATTGGCACTCAATCCAGAATTTGCATGA 1113 44.12 MADVGQNNTGDFPAVPTHGGQYVQYNIFGNPFEITSKYRPPIMPVGRGAYGIVCSILNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPVRREFSDVYISTELMDTDLHQIIRSNQTLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENESMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIYLELMNRRPLFPGRDHVHQMRLLTELLGTPTESDLGFIRNEDSKRYLRQLPPHPRQPLATVFPHVHPLAIDLVDRMLTFDPTRRITVEEALAHPYLERLHDVADEPVCPVPFSFEFEQQYLDEEQMKEMIYREALALNPEFA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2961319 2964266 + CmoCh01G005840.1 Cmo01g00584 374067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00584 370 Gene3D Phosphorylase Kinase; domain 1 22 361 - -
Cmo01g00584 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 369 - -
Cmo01g00584 370 CDD STKc_TEY_MAPK 32 367 - -
Cmo01g00584 370 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Cmo01g00584 370 Gene3D Transferase(Phosphotransferase) domain 1 123 351 - -
Cmo01g00584 370 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo01g00584 370 Pfam Protein kinase domain 44 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00584 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 369 - -
Cmo01g00584 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Cmo01g00584 370 ProSiteProfiles Protein kinase domain profile. 39 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00584 370 SUPERFAMILY Protein kinase-like (PK-like) 44 332 IPR011009 -
Cmo01g00584 370 SMART serkin_6 39 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00584 Cmo-Chr1:2961319 Cmo05g00453 Cmo-Chr5:2102114 0 dispersed
Cmo01g00581 Cmo-Chr1:2943268 Cmo01g00584 Cmo-Chr1:2961319 8.03E-122 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74027 PF00069 Pkinase 6.10E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00584 K20536 - csv:101202796 728.398