Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00604 ATGGGTGGAGACGGGGAAAACTATGGGAAAAAGGAACCTTTTGCTGCTAACATCTCGAATAACGAAACTTATCCTGCCTGGGCAACGGATGTTGGAGAATGCCTAGAGAAGTACCAAGTGAACCCTGATCTCGGATTATCTTCTGAGGAGGTTGAGAAACAGAGAAAGATCTACGGTTCCAATGAATTGGAGAAGCATGAGGGTACATCAATCTTTAAACTAGTTTTGGAACAATTTAATGATACACTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCGTGGTATGATGGTGAGGAAGGAGGTGAGATGGAGATTACAGCATTTGTGGAGCCTTTAGTTATTTTCTTGATATTGATTGTCAATGCCATTGTTGGCATTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCTCTTAAAGAAATTCAGTCTGAACAGGCTTCAGTAATACGAAATGGTAAACGTGTTTCAATTGTTTCCAAGGACATCGTTCCTGGTGATATAGTAGAACTCAGAGTTGGGGATAAGGTGCCTGCTGACATGCGAGTGTTGCGGTTAATCAGCTCAACTTTTCGGGTTGAGCAGGGGTCCTTGACTGGTGAGAGCGAAGCGGTGAGCAAGACTGCTAAGGCTGTGCCAGAAGATACAGACATACAAGGGAAAAAGTGTATGGTTTTTGCAGGGACAACAGTTGTCAATGGAAATTGTATTTGCCTTGTTACCCAGACAGGGATGAGCACTGAACTAGGACAGGTCCATTCTCAGATACAAGAAGCATCCCAGGGTGAAGATGATACACCATTGAAGAAGAAGTTGAATGAGTTTGGAGAGCTTTTAACAGCAATAATTGGAGTAATCTGTGCTCTAGTTTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAATATGTTGATGGGTGGCCAGCAAATTTCAAGTTCTCATTTGAGAAATGTACGTATTACTTCGAGATTGCCGTGGCATTGGCTGTAGCTGCAATTCCTGAAGGTTTGCCTGCAGTCATAACTACATGCTTGGCACTTGGCACTCGGAAAATGGCCCAAAAGAATGCTCTTGTTCGGAAGCTGCCCAGTGTTGAAACTCTTGGCTGTACAACTGTGATATGTTCTGATAAGACAGGGACTCTAACAACTAATCAGATGGCTGTAGCGAAGATTGTGGCTCTTGGTTCTCGTGTTGGTACTCTGCGAGCCTTTGATGTGGAAGGGACTACATATGATCCTTCAGATGGAAAAATAATTGGTTGGCTTGGAGGTCAACTGGATGCTAATCTGCAAATGTTGGCAAAGATTGCCGCTGTCTGTAATGATGCAGTTGTTGAAAAATCTGGTCATCATTTTGTTGTGAATGGAATGCCTACCGAAGCAGCATTGAAGGTTCTTGTGGAAAAGATGGGTCTTCCTGAAGGATATGACTCCACTTCAGCTTCCATTGGGGATGTCCTGCGATGCTGCGACGTTTGGAATAAGAACGAGCAACGCATTGCTACTCTAGAGTTTGACCGAGATCGTAAATCAATGGGAGTTATTACAAATTCTAGCTCAGGAAAGAAGTCATTACTCGTGAAGGGTGCTGTTGAAAATCTTTTGGAACGGAGTTCATTTATTCAACTTATTGATGGATCTATTGTGAAGTTGGACTCAGACTCAAAAACCCACCTCTCAAGTTACTTGCGTGAGATGTCATCAAGTGCATTAAGGTGTTTAGGTTTTGCATACAAGGAAGACCTTCCAGAATTTTCCACTTACAATAGTGGTGACGAAGAACATCCAGCACATCGGCTTTTACTTGACCCGTCCAATTACTCTAAAATTGAAAGTAATCTTATTTTTGCTGGCTTTGTTGGATTAAGGGATCCTCCCCGAAAAGAGGTTCATCAAGCAATCGAAGACTGTAAAGCTGCTGGTATTCGTGTTATGGTTATCACAGGGGACAACCAGAACACAGCCGAAGCTGTATGTCGAGAAATAGGTGTATTTGGACAACGTGAAGCTATAAGTTCCAGAAGTTTAACCGGAAAAGAGTTCATGGCAATGAGCCGGGAGGATCAAAAATCCCATTTAAGACAAGATAGAGGACTTCTTTTCTCAAGGGCTGAGCCAAGACATAAACAAGAGATAGTAAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCCATGACAGGAGATGGAGTCAATGATGCACCTGCTTTGAAGTTGGCTGATATTGGGATTGCGATGGGCATTGCCGGGACAGAGGTTGCTAAGGAAGCCTCCGACATGGTTCTGGCAGATGACAATTTTAGTACAATAGTTGCAGCAGTTGGTGAAGGCAGATCCATTTACGACAATATGAAGGCATTTATCAGGTACATGATTTCCTCAAACATCGGCGAGGTTGCGTCGATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTCGTTACAGATGGACCTCCAGCTACTGCGTTGGGATTTAATCCACCCGATACCGATATAATGAAGAAACCGCCTAGAAGAAGTGATGACTCATTGATCACGGCCTGGATTTTGTTCCGCTATTTGGTTATTGGACTTTACGTAGGGATAGCAACTGTAGGAGTATTTATTATTTGGTATACACATGCTTCCTTCATGGGCATTGACCTGTCCGGAGATGGTCACAGTCTGGTCTCGTACTCTCAGCTCGCAAACTGGGATCAGTGCCCGTCTTGGGAAGGGTTTACCGTGTCGCCTTTCATGGCTGGGGACCAAGTCTTCAGCTTCGATTCAGATCCATGCGACTACTTCCGTTCAGGCAAGATCAAGGCCTCAACTCTCTCACTCTCCGTTTTGGTCGCCATTGAGATGTTCAATTCCCTCAATGCCCTCTCAGAGGATGGAAGCTTGTTGACAATGCCCCCATGGGTTAACCCGTGGCTGCTCCTCGCCATGTCTGTTTCATTTGGCTTGCATTTCTTGATCCTCTATGTGCCATTCCTCGCGCAAATTTTCGGCATTGTCCCCCTCTCCTTGAATGAATGGCTCTTGGTTCTGGCTGTGGCAATGCCCGTGATCTTAATTGATGAGATTCTGAAATTCGTGGGAAGGCTTACAAGCGGGTTGAGGACATCTCGCCCGAGCAGCAGATTGTTGAAGCAGAAATCAGACTAA 3198 44.34 MGGDGENYGKKEPFAANISNNETYPAWATDVGECLEKYQVNPDLGLSSEEVEKQRKIYGSNELEKHEGTSIFKLVLEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQENNAEKALEALKEIQSEQASVIRNGKRVSIVSKDIVPGDIVELRVGDKVPADMRVLRLISSTFRVEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMVFAGTTVVNGNCICLVTQTGMSTELGQVHSQIQEASQGEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPSDGKIIGWLGGQLDANLQMLAKIAAVCNDAVVEKSGHHFVVNGMPTEAALKVLVEKMGLPEGYDSTSASIGDVLRCCDVWNKNEQRIATLEFDRDRKSMGVITNSSSGKKSLLVKGAVENLLERSSFIQLIDGSIVKLDSDSKTHLSSYLREMSSSALRCLGFAYKEDLPEFSTYNSGDEEHPAHRLLLDPSNYSKIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAVCREIGVFGQREAISSRSLTGKEFMAMSREDQKSHLRQDRGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDTDIMKKPPRRSDDSLITAWILFRYLVIGLYVGIATVGVFIIWYTHASFMGIDLSGDGHSLVSYSQLANWDQCPSWEGFTVSPFMAGDQVFSFDSDPCDYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSLNEWLLVLAVAMPVILIDEILKFVGRLTSGLRTSRPSSRLLKQKSD 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3069960 3075731 - CmoCh01G006040.1 Cmo01g00604 374087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00604 1065 SFLD C1.7: P-type atpase like 361 784 - -
Cmo01g00604 1065 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 9 1057 - -
Cmo01g00604 1065 SUPERFAMILY Calcium ATPase, transduction domain A 149 259 IPR008250 -
Cmo01g00604 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 307 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g00604 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 319 401 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g00604 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 706 816 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo01g00604 1065 Pfam E1-E2 ATPase 147 360 - -
Cmo01g00604 1065 Pfam haloacid dehalogenase-like hydrolase 624 746 - -
Cmo01g00604 1065 Gene3D - 390 631 IPR023299 GO:0000166
Cmo01g00604 1065 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Cmo01g00604 1065 Gene3D - 377 777 IPR023214 -
Cmo01g00604 1065 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Cmo01g00604 1065 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Cmo01g00604 1065 PRINTS P-type cation-transporting ATPase superfamily signature 624 635 - -
Cmo01g00604 1065 PRINTS P-type cation-transporting ATPase superfamily signature 646 656 - -
Cmo01g00604 1065 PRINTS P-type cation-transporting ATPase superfamily signature 732 751 - -
Cmo01g00604 1065 PRINTS P-type cation-transporting ATPase superfamily signature 756 768 - -
Cmo01g00604 1065 Pfam Cation transport ATPase (P-type) 444 547 - -
Cmo01g00604 1065 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 628 IPR023299 GO:0000166
Cmo01g00604 1065 SUPERFAMILY HAD-like 378 836 IPR036412 -
Cmo01g00604 1065 PANTHER CALCIUM-TRANSPORTING ATPASE 9 1057 - -
Cmo01g00604 1065 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Cmo01g00604 1065 SFLD p-type atpase 361 784 IPR044492 -
Cmo01g00604 1065 Gene3D - 45 262 - -
Cmo01g00604 1065 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1045 IPR023298 -
Cmo01g00604 1065 Pfam Cation transporting ATPase, C-terminus 817 1043 IPR006068 -
Cmo01g00604 1065 Gene3D - 77 1045 - -
Cmo01g00604 1065 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00604 Cmo-Chr1:3069960 Cmo12g00543 Cmo-Chr12:3304011 0 dispersed
Cmo01g00604 Cmo-Chr1:3069960 Cmo13g00152 Cmo-Chr13:940015 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00604 K01537 - csv:101206729 1928.68