Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00616 ATGGAAGTCACGGCGGAGATAGGCGGAACTCCGGTGAGCTCACGGTGGAATCCGACGAAGGAGCAAATAAGCATTTTGGAGAACTTGTATGAACAAGGCGTGAGAACGCCGAGTGCTGAGCAAATACAACAGATTACGAATCGGTTGAAGAGTTATGGGCATATTGAAGGCAAAAATGTGTTCTATTGCCCATACTACGTACATCAGAACAACGTCGGGGTTTATCCACAGCAACAAAGCAATTCCAAGATGAGGAGATCACATAATGGCGGCTTTGGGTACCATTCATGTCAAAATGACAACCCCACCACCCAAACTCTCTCTCTTTTTCCCACTCACCCAACTGGAGATTTACAAGCTGGACCGCCGCCGTCGCCGTCGCCGCCTCCGCCGCACGCGGAGGCGGCAACGGCATCTTCTGGAATGTCTGCCGACGAGTCTTCTGGCGGCTGTCGAACTTACTTTGAATTTTTTCTGACCGAAGGCCTGCTCTACACACTTGCTGATGCAGCGGTTGCTGTGGATTCGACTGTTTCTGGTGGCGCCGCATCGAGTTCCGCTGATACCGCGGTGCAGAAGAACGGTGGATGGTTTGGATTTATCTCCGATGCCATGGAAGTCGTTCTTAAAGTGTTGAAGGATGGACTTTCGGCTGTGCATGTGCCATATGCATATGGGTTTGCAATTATTTTACTTACTATTATCGTTAAGGTTGCAACTTTTCCTCTCACCAAGCAACAGGTTGAGTCAACATTGGCTATGCAAAATCTTCAACCAAAGATTAAAGCCATCCAACAAAGATACGCTGGCAATCAGGAAAGAATACAACTTGAGACATCACGGCTTTATAGACAAGCTGGAGTTAATCCTCTAGCAGGCTGTTTCCCAACTTTGGCCACCATACCAGTCTGGATTGGACTATATCAAGCCCTTTCGAATGTGGCAAATGAGGGATTATTCACAGAAGGTTTCTTTTGGATTCCTTCTCTTGGTGGACCAACTACTATTGCTGCTCGACAAAGTGGAGCGGGAATCTCTTGGTTGTTTCCTTTTGTGGATGGCCATCCACCATTGGGCTGGTCTGACACTGCAGCGTACCTTGTATTACCTGTTCTCCTTGTCGTATCTCAGTATGTATCAATGGAAATCATGAAGCCTCCCCAGACTGATGATCCAACACAAAAGAACACACTCCTTATTTTCAAGTTTCTTCCCCTCATGATCGGTTACTTCTCCTTGTCTGTTCCATCAGGGTTATCAATTTACTGGTTCACCAACAATGTTCTCAGCACGGCTCAGCAAGTATGGTTACGCAAATTAGGAGGTGCAAAGCCTGTTGTAAATGAGGATGCTTCTGGAATCATAACAGCAGGACGTGCCAAACGAACGTCCGAATCAGAAAGAACGGGTGACAGATTTAAGCAGTTGAGGGAAGACGAGAAGAAGAATAAGTTAAGCAAGGCAGCTCGATCAGCAGAGATTCTGACTTTGGCTTCTGAGTCTGATAATGAGGATGAGTATGATGAGGAGACATCAGAGAAGGGTGAGGACAGTCTAGAAGAGGCATATGCGTCAGGTGCAGACAAAGACATCCCAACCTATAATCGACAGAAGAGAAGCAAGCGATCAAAGAGGAAACGTGCAGTATGA 1650 46.85 MEVTAEIGGTPVSSRWNPTKEQISILENLYEQGVRTPSAEQIQQITNRLKSYGHIEGKNVFYCPYYVHQNNVGVYPQQQSNSKMRRSHNGGFGYHSCQNDNPTTQTLSLFPTHPTGDLQAGPPPSPSPPPPHAEAATASSGMSADESSGGCRTYFEFFLTEGLLYTLADAAVAVDSTVSGGAASSSADTAVQKNGGWFGFISDAMEVVLKVLKDGLSAVHVPYAYGFAIILLTIIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTTIAARQSGAGISWLFPFVDGHPPLGWSDTAAYLVLPVLLVVSQYVSMEIMKPPQTDDPTQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNEDASGIITAGRAKRTSESERTGDRFKQLREDEKKNKLSKAARSAEILTLASESDNEDEYDEETSEKGEDSLEEAYASGADKDIPTYNRQKRSKRSKRKRAV 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3166970 3176177 - CmoCh01G006160.1 Cmo01g00616 374099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00616 549 Pfam Homeodomain 14 62 IPR001356 GO:0003677
Cmo01g00616 549 CDD homeodomain 15 50 IPR001356 GO:0003677
Cmo01g00616 549 PANTHER OXA1 160 543 IPR001708 GO:0016021|GO:0032977
Cmo01g00616 549 PANTHER INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC 160 543 - -
Cmo01g00616 549 MobiDBLite consensus disorder prediction 78 144 - -
Cmo01g00616 549 MobiDBLite consensus disorder prediction 499 516 - -
Cmo01g00616 549 MobiDBLite consensus disorder prediction 478 549 - -
Cmo01g00616 549 Pfam 60Kd inner membrane protein 225 439 IPR001708 GO:0016021|GO:0032977
Cmo01g00616 549 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 225 438 IPR028055 -
Cmo01g00616 549 MobiDBLite consensus disorder prediction 117 133 - -
Cmo01g00616 549 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00616 Cmo-Chr1:3166970 Cmo12g00034 Cmo-Chr12:197498 3.06E-140 dispersed
Cmo16g00597 Cmo-Chr16:2903364 Cmo01g00616 Cmo-Chr1:3166970 4.91E-06 dispersed
Cmo01g00616 Cmo-Chr1:3166970 Cmo05g00063 Cmo-Chr5:234271 1.04E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9044 PF02096 60KD_IMP 3.30E-54 CL0376 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00616 K03217 - csv:101217620 653.669