Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00618 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATCATCATCATCTTCACATACCCAATAATGGATCTCCTCACCATCTGCAACCCTCATCCACTGCGCTGCCCTCTCATGTCGGTGCCACCGGGGTTGGCTCGATCCGCCGTGGTTCGATGGTCGACCGAGCTCGGCTAGCTAACATACCACTACCCGAGACTGCCCTCAAATGTCCTCGATGTGATTCCTCCAACACCAAGTTTTGTTACTTCAATAACTATAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACCTGTCGTCGATACTGGACTCGTGGTGGCGCTCTTCGAAACGTTCCGGTTGGAGGCGGTTGTCGTCGGAATAAAAAGAATAAAAGTAGACGCTCGAAATCTCCGGCGACCGGGAACGAAACGAGTAACAATAACAATTCAAACTCACCTACCAATACAATTCCCTTGCATAGTAGCAACGCTGAGAATATTATTGGTCAGTTACAGCCTCAAAATCCTCATCTTTCATTCATGGCTACGTTGAACAATTTCTCTCGTTATGGGACAGCCAATTTAGGGTTGAGTTTCAATGAGATCCAAACTCAACCAGGAGACATCGGAAACAGCGCCCTTCTAAATCATCACTGGCGCAATTCCCAAAGCTTTCCTCTTTCAGCTGACCTAGAAACGCCGACAGCGTTGTACCCATTTCAAATTAGCGAAGGCGGCAACAACGCAACAAATTCAATTCTAAATCCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGCTGAAATCATCAAATTTGGGTGTCAACAATTCGGACAATAATAATCAATTTTGGAACGGCGGAAATGGGTGGACAGATCTTTCGGCTATCAGTTCTTCGTCAAGTGGCCATATTTCTTGTGACTTCAATCATTGA 969 45.61 MDFSSVPLYLDPPPNWHQQSNHHHHLHIPNNGSPHHLQPSSTALPSHVGATGVGSIRRGSMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHLSFMATLNNFSRYGTANLGLSFNEIQTQPGDIGNSALLNHHWRNSQSFPLSADLETPTALYPFQISEGGNNATNSILNPNSRATHLPPVKIEETQVLNLLKSSNLGVNNSDNNNQFWNGGNGWTDLSAISSSSSGHISCDFNH 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3189631 3190952 - CmoCh01G006180.1 Cmo01g00618 374101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00618 322 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Cmo01g00618 322 MobiDBLite consensus disorder prediction 14 51 - -
Cmo01g00618 322 MobiDBLite consensus disorder prediction 121 162 - -
Cmo01g00618 322 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 23 313 - -
Cmo01g00618 322 MobiDBLite consensus disorder prediction 139 162 - -
Cmo01g00618 322 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Cmo01g00618 322 MobiDBLite consensus disorder prediction 33 48 - -
Cmo01g00618 322 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Cmo01g00618 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 313 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00618 Cmo-Chr1:3189631 Cmo04g02761 Cmo-Chr4:19969703 1.08E-53 dispersed
Cmo01g00618 Cmo-Chr1:3189631 Cmo13g00132 Cmo-Chr13:757753 1.69E-102 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo14g00147 Cmo-Chr14:642536 4.57E-58 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo02g00815 Cmo-Chr2:4986104 1.68E-44 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo20g00451 Cmo-Chr20:2102972 1.70E-50 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo04g00221 Cmo-Chr4:1111117 1.19E-62 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo04g01262 Cmo-Chr4:6404620 4.50E-57 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo06g00304 Cmo-Chr6:1499655 2.46E-54 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo07g01030 Cmo-Chr7:5100192 9.06E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9045 PF02701 zf-Dof 2.50E-32 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00618 - - csv:101218334 435.647