Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00618 | ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATCATCATCATCTTCACATACCCAATAATGGATCTCCTCACCATCTGCAACCCTCATCCACTGCGCTGCCCTCTCATGTCGGTGCCACCGGGGTTGGCTCGATCCGCCGTGGTTCGATGGTCGACCGAGCTCGGCTAGCTAACATACCACTACCCGAGACTGCCCTCAAATGTCCTCGATGTGATTCCTCCAACACCAAGTTTTGTTACTTCAATAACTATAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACCTGTCGTCGATACTGGACTCGTGGTGGCGCTCTTCGAAACGTTCCGGTTGGAGGCGGTTGTCGTCGGAATAAAAAGAATAAAAGTAGACGCTCGAAATCTCCGGCGACCGGGAACGAAACGAGTAACAATAACAATTCAAACTCACCTACCAATACAATTCCCTTGCATAGTAGCAACGCTGAGAATATTATTGGTCAGTTACAGCCTCAAAATCCTCATCTTTCATTCATGGCTACGTTGAACAATTTCTCTCGTTATGGGACAGCCAATTTAGGGTTGAGTTTCAATGAGATCCAAACTCAACCAGGAGACATCGGAAACAGCGCCCTTCTAAATCATCACTGGCGCAATTCCCAAAGCTTTCCTCTTTCAGCTGACCTAGAAACGCCGACAGCGTTGTACCCATTTCAAATTAGCGAAGGCGGCAACAACGCAACAAATTCAATTCTAAATCCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGCTGAAATCATCAAATTTGGGTGTCAACAATTCGGACAATAATAATCAATTTTGGAACGGCGGAAATGGGTGGACAGATCTTTCGGCTATCAGTTCTTCGTCAAGTGGCCATATTTCTTGTGACTTCAATCATTGA | 969 | 45.61 | MDFSSVPLYLDPPPNWHQQSNHHHHLHIPNNGSPHHLQPSSTALPSHVGATGVGSIRRGSMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHLSFMATLNNFSRYGTANLGLSFNEIQTQPGDIGNSALLNHHWRNSQSFPLSADLETPTALYPFQISEGGNNATNSILNPNSRATHLPPVKIEETQVLNLLKSSNLGVNNSDNNNQFWNGGNGWTDLSAISSSSSGHISCDFNH | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3189631 | 3190952 | - | CmoCh01G006180.1 | Cmo01g00618 | 374101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00618 | 322 | ProSiteProfiles | Zinc finger Dof-type profile. | 77 | 131 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo01g00618 | 322 | MobiDBLite | consensus disorder prediction | 14 | 51 | - | - | |
Cmo01g00618 | 322 | MobiDBLite | consensus disorder prediction | 121 | 162 | - | - | |
Cmo01g00618 | 322 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 23 | 313 | - | - | |
Cmo01g00618 | 322 | MobiDBLite | consensus disorder prediction | 139 | 162 | - | - | |
Cmo01g00618 | 322 | Pfam | Dof domain, zinc finger | 76 | 131 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo01g00618 | 322 | MobiDBLite | consensus disorder prediction | 33 | 48 | - | - | |
Cmo01g00618 | 322 | ProSitePatterns | Zinc finger Dof-type signature. | 79 | 115 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo01g00618 | 322 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 23 | 313 | IPR045174 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo04g02761 | Cmo-Chr4:19969703 | 1.08E-53 | dispersed | |
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo13g00132 | Cmo-Chr13:757753 | 1.69E-102 | wgd | |
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo14g00147 | Cmo-Chr14:642536 | 4.57E-58 | wgd | |
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo02g00815 | Cmo-Chr2:4986104 | 1.68E-44 | wgd | |
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo20g00451 | Cmo-Chr20:2102972 | 1.70E-50 | wgd | |
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo04g00221 | Cmo-Chr4:1111117 | 1.19E-62 | wgd | |
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo04g01262 | Cmo-Chr4:6404620 | 4.50E-57 | wgd | |
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo06g00304 | Cmo-Chr6:1499655 | 2.46E-54 | wgd | |
Cmo01g00618 | Cmo-Chr1:3189631 | Cmo07g01030 | Cmo-Chr7:5100192 | 9.06E-32 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9045 | PF02701 | zf-Dof | 2.50E-32 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00618 | - | - | csv:101218334 | 435.647 |