Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00618 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATCATCATCATCTTCACATACCCAATAATGGATCTCCTCACCATCTGCAACCCTCATCCACTGCGCTGCCCTCTCATGTCGGTGCCACCGGGGTTGGCTCGATCCGCCGTGGTTCGATGGTCGACCGAGCTCGGCTAGCTAACATACCACTACCCGAGACTGCCCTCAAATGTCCTCGATGTGATTCCTCCAACACCAAGTTTTGTTACTTCAATAACTATAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACCTGTCGTCGATACTGGACTCGTGGTGGCGCTCTTCGAAACGTTCCGGTTGGAGGCGGTTGTCGTCGGAATAAAAAGAATAAAAGTAGACGCTCGAAATCTCCGGCGACCGGGAACGAAACGAGTAACAATAACAATTCAAACTCACCTACCAATACAATTCCCTTGCATAGTAGCAACGCTGAGAATATTATTGGTCAGTTACAGCCTCAAAATCCTCATCTTTCATTCATGGCTACGTTGAACAATTTCTCTCGTTATGGGACAGCCAATTTAGGGTTGAGTTTCAATGAGATCCAAACTCAACCAGGAGACATCGGAAACAGCGCCCTTCTAAATCATCACTGGCGCAATTCCCAAAGCTTTCCTCTTTCAGCTGACCTAGAAACGCCGACAGCGTTGTACCCATTTCAAATTAGCGAAGGCGGCAACAACGCAACAAATTCAATTCTAAATCCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGCTGAAATCATCAAATTTGGGTGTCAACAATTCGGACAATAATAATCAATTTTGGAACGGCGGAAATGGGTGGACAGATCTTTCGGCTATCAGTTCTTCGTCAAGTGGCCATATTTCTTGTGACTTCAATCATTGA 969 45.61 MDFSSVPLYLDPPPNWHQQSNHHHHLHIPNNGSPHHLQPSSTALPSHVGATGVGSIRRGSMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHLSFMATLNNFSRYGTANLGLSFNEIQTQPGDIGNSALLNHHWRNSQSFPLSADLETPTALYPFQISEGGNNATNSILNPNSRATHLPPVKIEETQVLNLLKSSNLGVNNSDNNNQFWNGGNGWTDLSAISSSSSGHISCDFNH 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3189631 3190952 - CmoCh01G006180.1 Cmo01g00618 374101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00618 322 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Cmo01g00618 322 MobiDBLite consensus disorder prediction 14 51 - -
Cmo01g00618 322 MobiDBLite consensus disorder prediction 121 162 - -
Cmo01g00618 322 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 23 313 - -
Cmo01g00618 322 MobiDBLite consensus disorder prediction 139 162 - -
Cmo01g00618 322 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Cmo01g00618 322 MobiDBLite consensus disorder prediction 33 48 - -
Cmo01g00618 322 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Cmo01g00618 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 313 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00618 - - - csv:101218334 435.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00618 Cmo-Chr1:3189631 Cmo04g02761 Cmo-Chr4:19969703 1.08E-53 dispersed
Cmo01g00618 Cmo-Chr1:3189631 Cmo13g00132 Cmo-Chr13:757753 1.69E-102 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo14g00147 Cmo-Chr14:642536 4.57E-58 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo02g00815 Cmo-Chr2:4986104 1.68E-44 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo20g00451 Cmo-Chr20:2102972 1.70E-50 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo04g00221 Cmo-Chr4:1111117 1.19E-62 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo04g01262 Cmo-Chr4:6404620 4.50E-57 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo06g00304 Cmo-Chr6:1499655 2.46E-54 wgd
Cmo01g00618 Cmo-Chr1:3189631 Cmo07g01030 Cmo-Chr7:5100192 9.06E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 6.3e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 3.2e-41 165.6
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.6e-40 161.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.6e-40 161.8
Cmo15g01373 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.7e-39 160.2
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 6.1e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.4e-41 166.8
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 5.5e-38 154.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.7e-37 152.5
Cmo04g02761 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 5.1e-40 162.5
Cmo14g00147 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.2e-38 157.1
Cmo06g00304 CCT,CST,ECH 1 127 C2C2-Dof Transcription Factor Family AT2G37590 64.8 4.8e-38 156.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 58.0 4.1e-37 152.9
Cmo13g00132 CCT,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cmo15g01373 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 73.1 1.5e-39 161.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 6.2e-40 162.5
Cmo13g00132 CCT,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cmo15g00409 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.3e-37 154.8
Cmo03g00443 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.4e-36 150.6
Cmo03g00443 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.9e-37 152.5
Cmo13g00132 CCT,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 51.6 2.2e-36 150.6
Cmo11g00231 CCT,CST 26 311 C2C2-Dof Transcription Factor Family AT5G60850 53.2 3.9e-50 196.1
Cmo10g00299 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 1.1e-47 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9045 PF02701 zf-Dof 2.50E-32 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00618 Cmo_Chr01 FPKM 1.137432 0.89302 38.041691 38.340267 33.616047 34.18568 33.022583 0.977099 0.599337 1.02091