Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00619 ATGGAGGAAGATAACGGCGCTCTGATTCAGAGCTTGATCGATGTTGTGAACGAGATTGCGTGGATCTCGGATTTTAGGCTTACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATACCAAAGAGCCAGTGTCTGAGGATACTCTCAAGGCTCTCGTGTCGTTGAAAGAAGCCCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCCAGGGGAGCAAGATTTTTCTGGCCGTTGAGAGGGAGCAAATTATGGTCAAATTTCATGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATACCCTACGATAAACTTGATGTATCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATACCCCTGACTCTGAGCTGATGGACGATATCCTTGCCCTTTACAACACAAGCAATGATTCTTCTGTGGATCAGAATCGCCTCAGGAGATTAGCTGAAAAATTACAATTAATTGGAATATCCGACCTTACACAAGAGTCCATAGCTTTGCATGAGATGGTTACTGCTAGTGGAGGTGATCCAGGTGATCCAGTTGAGAGCATTGGGACGATGTCAGGGCTGCTGAAGAAAATAAAAGATTTTGTACAAACGGAGAACCTTGAAACGGATACTCCTGGCAGAGACAAGAGTCCTCCTGCTAGTTGTAGTGGACAAATTTCAAATGAGAAAAATAATGCGGCCCCAGTTATACCCGAAGATTTTCGCTGTCCCATATCCCTGGAGTTGATGAGAGATCCTGTTATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGTTTGAAGCAGGGCACGGAACATGTCCAAAGACACAACAGAATCTTTCAAGCACTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCACCAAAACGACCCAGCAGTGATCAATCATGTAGAAGCTCATCATCTTGCTCGGCTGCTGAACGCACGAAGATTGATATTCTGCTCTGCAAACTTGCATCAGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCGAAGCGGAATGCAGATAATCGTGTTGCAATTGCTGAGGCTGGTGCAATACCTCTTCTTGTTGGCCTTCTTTCAACTCCAGATTCTCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTTTCTATATGTGAGGACAATAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTGCTCGTGCTCAAGAAAGGGAGCATGGAAGCCCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAGAATAAAGTTCGAATTGGTGCCTCTGGAGCTATCCCGCCGCTTGTTACGCTGCTTAGCCAAGGCACTCAAAGAGGCAAGAAAGATGCCGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGATCCGGAATGGTGGACGAAGCCTTAGCCATCTTGGCAATACTCTCTAGCCATCCCGAAGGGAAAGCAGTGATCAGATCTGCAAAGGCAGTGCCAGTTTTGGTAGATGTTATAGGGACAGGATCCCCCAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCATCTCTGCTCTGGAGATGAACAACACCTATTAGAGGCCAGGGAGCTTGGAGTGATGAGTTCATTGATAGATTTGGCACAAAATGGCACGGATAGAGGCAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTCTTAAGAGCACACGGAGGAGACTCGGGTGCAAGCACCAGAGTCTCAACCTCAAAACCAGCCATCCCTATCGAGCACTACGACGGAAGTCGCTGGTAG 2001 47.48 MEEDNGALIQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDTKEPVSEDTLKALVSLKEALESAKKLLRFGSQGSKIFLAVEREQIMVKFHEVTAQLEQALEGIPYDKLDVSDEVKEQVELVLAQFRRAKGRADTPDSELMDDILALYNTSNDSSVDQNRLRRLAEKLQLIGISDLTQESIALHEMVTASGGDPGDPVESIGTMSGLLKKIKDFVQTENLETDTPGRDKSPPASCSGQISNEKNNAAPVIPEDFRCPISLELMRDPVIVSTGQTYERSCIEKWFEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSDQSCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSQGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGSGMVDEALAILAILSSHPEGKAVIRSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLLEARELGVMSSLIDLAQNGTDRGKRKAAQLLERMNRLLRAHGGDSGASTRVSTSKPAIPIEHYDGSRW 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3195460 3200052 - CmoCh01G006190.1 Cmo01g00619 374102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00619 666 Pfam U-box domain 261 331 IPR003613 GO:0004842|GO:0016567
Cmo01g00619 666 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 642 - -
Cmo01g00619 666 MobiDBLite consensus disorder prediction 232 257 - -
Cmo01g00619 666 PANTHER U BOX DOMAIN-CONTAINING 6 642 - -
Cmo01g00619 666 SMART arm_5 470 510 IPR000225 GO:0005515
Cmo01g00619 666 SMART arm_5 429 469 IPR000225 GO:0005515
Cmo01g00619 666 SMART arm_5 594 634 IPR000225 GO:0005515
Cmo01g00619 666 SMART arm_5 388 428 IPR000225 GO:0005515
Cmo01g00619 666 SMART arm_5 552 592 IPR000225 GO:0005515
Cmo01g00619 666 SMART arm_5 511 551 IPR000225 GO:0005515
Cmo01g00619 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 334 IPR013083 -
Cmo01g00619 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Cmo01g00619 666 SUPERFAMILY ARM repeat 359 632 IPR016024 -
Cmo01g00619 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 399 441 IPR000225 GO:0005515
Cmo01g00619 666 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Cmo01g00619 666 Gene3D - 340 641 IPR011989 -
Cmo01g00619 666 Pfam Armadillo/beta-catenin-like repeat 388 427 IPR000225 GO:0005515
Cmo01g00619 666 Pfam Armadillo/beta-catenin-like repeat 553 592 IPR000225 GO:0005515
Cmo01g00619 666 Pfam Armadillo/beta-catenin-like repeat 471 509 IPR000225 GO:0005515
Cmo01g00619 666 MobiDBLite consensus disorder prediction 240 256 - -
Cmo01g00619 666 SUPERFAMILY RING/U-box 250 337 - -
Cmo01g00619 666 CDD RING-Ubox_PUB 265 307 IPR045210 -
Cmo01g00619 666 Gene3D - 7 116 IPR036537 GO:0007166
Cmo01g00619 666 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00619 Cmo-Chr1:3195460 Cmo18g00911 Cmo-Chr18:10298233 0 dispersed
Cmo01g01549 Cmo-Chr1:11926056 Cmo01g00619 Cmo-Chr1:3195460 5.38E-17 dispersed
Cmo09g00772 Cmo-Chr9:3919460 Cmo01g00619 Cmo-Chr1:3195460 2.57E-06 dispersed
Cmo18g00411 Cmo-Chr18:2697402 Cmo01g00619 Cmo-Chr1:3195460 5.72E-98 dispersed
Cmo18g00698 Cmo-Chr18:8845107 Cmo01g00619 Cmo-Chr1:3195460 6.91E-52 dispersed
Cmo18g01102 Cmo-Chr18:11469594 Cmo01g00619 Cmo-Chr1:3195460 5.66E-16 dispersed
Cmo20g00999 Cmo-Chr20:5999322 Cmo01g00619 Cmo-Chr1:3195460 3.61E-26 dispersed
Cmo02g00814 Cmo-Chr2:4982851 Cmo01g00619 Cmo-Chr1:3195460 2.70E-30 transposed
Cmo12g00099 Cmo-Chr12:539606 Cmo01g00619 Cmo-Chr1:3195460 1.06E-30 transposed
Cmo01g00619 Cmo-Chr1:3195460 Cmo13g00131 Cmo-Chr13:747202 0 wgd
Cmo01g00619 Cmo-Chr1:3195460 Cmo02g00812 Cmo-Chr2:4981426 4.87E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00619 - - csv:101218572 1082.01