Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00634 ATGGCTACAACGGCGATTCTCCTCTGTATTGCATCTCTTATCTCTACAATGTGGTCGGCTACTGCGAGAATCCCCGGCGTCTACTCCGGCGGTCCTTGGGAGAGTGCCCACGCTACCTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGTTGAGCACAGCGCTATTCAATAATGGGCTGAGCTGTGGTGCCTGTTTCGAGATTAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCGTCGATTATGATTACCGCCACGAACTTCTGCCCGCCCAATTTTGCTCTGCCCAGTGACAATGGCGGTTGGTGTAACCCTCCTCGGCCGCATTTCGATTTGGCGATGCCTATGTTCCTTAAAATCGCCGAGTACCGCGCTGGTATCGTCCCCGTCGCCTACCGCCGGGTGCCATGCCGGAAGCAAGGGGGGATACGTTACACAATCCACGGGTTCCGGTACTTCAACCTGGTTTTAATCACCAACGTCGCAGGTGCAGGGGATATCGTGAAGGTTAGCGTGAAAGGCACGCGCACAGGCTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTAGTGGGCCAGGCCCTTTCATTTAGAGTCACAGGCAGTGACAGAAGGACTTCCACCACCTACAACGTGGCACCCCCTAATTGGCAGTTCGGCCAGACCTTCATCGGCAAGAATTTTAGGGTTTGA 780 56.03 MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRYTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTTYNVAPPNWQFGQTFIGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3246744 3248140 - CmoCh01G006340.1 Cmo01g00634 374117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00634 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Cmo01g00634 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cmo01g00634 259 Gene3D - 20 161 IPR036908 -
Cmo01g00634 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cmo01g00634 259 PANTHER EXPANSIN-A15 5 258 IPR002963 GO:0009664
Cmo01g00634 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cmo01g00634 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cmo01g00634 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cmo01g00634 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Cmo01g00634 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Cmo01g00634 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Cmo01g00634 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cmo01g00634 259 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Cmo01g00634 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cmo01g00634 259 SMART dpbb_1 68 155 IPR007112 -
Cmo01g00634 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cmo01g00634 259 Gene3D - 166 257 IPR036749 -
Cmo01g00634 259 PANTHER EXPANSIN 5 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00634 Cmo-Chr1:3246744 Cmo03g00435 Cmo-Chr3:4977128 3.76E-166 dispersed
Cmo04g02376 Cmo-Chr4:17717144 Cmo01g00634 Cmo-Chr1:3246744 2.96E-94 dispersed
Cmo15g00795 Cmo-Chr15:3908668 Cmo01g00634 Cmo-Chr1:3246744 5.13E-94 dispersed
Cmo01g00634 Cmo-Chr1:3246744 Cmo13g00120 Cmo-Chr13:694183 9.07E-173 wgd
Cmo01g00634 Cmo-Chr1:3246744 Cmo02g00797 Cmo-Chr2:4921039 5.58E-169 wgd
Cmo01g00634 Cmo-Chr1:3246744 Cmo20g00433 Cmo-Chr20:2031500 8.84E-171 wgd
Cmo01g00634 Cmo-Chr1:3246744 Cmo04g00211 Cmo-Chr4:1056541 5.47E-97 wgd
Cmo01g00634 Cmo-Chr1:3246744 Cmo04g01251 Cmo-Chr4:6347642 1.03E-139 wgd
Cmo01g00634 Cmo-Chr1:3246744 Cmo07g01042 Cmo-Chr7:5279087 1.70E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00634 - - csv:101206662 518.85