Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00641 ATGGACAATCTCCTCGACGATTTCCCCAATTCATGGAATAATTTTCACTACAACCCTCATCTCTCAAATGGGTTCTTCAACGTCAACCGAGAAATCTTCGACCCTCTTCATCATAATTCGTCGTCGTCGTCGTCGTCGACATCGCCGTCGCTGTCGCCGTCGAGCACGGAGGGTAACTCACCGGATTGTCACGACACCTCTAATACGATGCTGAAGTACATCACGGAGATGCTGATGGACGAAGAGGAAGATCTCAAAACTAAGCCCTGTATGCTTATTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTAAGAAGTATCCTCCTTCTCCAATCGGCCTTGGCGATTCTACTCAGAATTTTAGATCTGATTTGGGTTTTTTTAAGGCTGAAGATGAATCTGAATCTTTTAATGGAGATTCCTCTGTTTTTCCCCCTTCTGATAAACCTCTTTTGAGTCAAGATTCCTTGTTTGGGATGCAATATATTTTCCATTTTAGGCAAGGAGCTGTGGAGGCTAGCAAATTTCTTCCTGTTAATGGTAAATTTGGAACCATTGACTTGGATAATGATTCATCTGCTTCTGTTCCTTCTAGGGCTGTTGATTTTTCTTGGCTTGCTGCTGTGGGTGATGCTAGATCCACCCTTCAAAATGGGTTGTTTAGAGAAAAGAAGAATCATCAAAGGGAAGACAGTGATGAGGAGTTGAGAAGTACTAAACAATCTGCTACTTTTGCTGATGATAGTTCATTGTCTGAGTTGTTTGATGAACTCTTGCTGTGTAGGGGTGAGAGCCGGCAGTCCCCATCATGGGGGTCGGACGGTTCGTCGGAGAACGAATCGAGTAAGAAATCGAGAAAGAAAACGAAAGGTAAGAAGAATCGATCTAGGAAGCAAGAGAGTTGTGTGGAAGTTGTGGATTTATGGACATTGTTGATTCAATGTGCTCAAGCTGTTTCAAATTATGATCAGAGGACTGCTAATGAGCTGCTTAATCAAATTAGGCACCATTCTAATCCATCAGGGGATGGAAACCAAAGATTAGCTTATTTCTTTGCTAAAGGCCTCGAGACTCGGCTTGCGGCCGGGACGCCGCTGTATATGCCGTTTGCAAGCAATGAAACCTCTGCGGCTGATATCTTGAAAACTTATCAGATGTTCATCAAGGCATGCCCCTTTCGGCGGATGTCATATTTCTATGCCAATAGAACAATTCTGAAGCTAGCTGAGAATGTAACAAGGCTGCATATTGTTGATTTTGGTATATTATATGGTCTTCAATGGCCTTGCTTGATTCAGCGGCTCTCCGACAGACCTGGTGGACCTCCCAAGCTGAGAATCACAGGGATTGAGCTTCCTCAGCCAGGCTTCCGCCCCGCCGAACGTGTCGAGCAGACTGGACGTCGCCTTGCACATTACTGCAAAAGATTTAACGTGCCATTTGAACACAAGGTCTTGGCGCAGAAATGGGAGACTGTTAAGTACGAGGATCTTAATGTCAATAGAGACGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCCGACGAAACCGTCGTTGCAAACAGTCCAAGAGACAAGGTTCTGAAGTTGATCAGGAAAATCAACCCAGATCTGTTCATTCATGAAGTCACCAATGGTTCATTCAACACTCCATTCTTCAACACAAGGTTTAAGGAGGCACTCTTTTACTACTCATCGTTATTCGACATGTACGAGGCGACCGTGCCTCGAGATAATCCACAGAGGTATCTATGCGAAAGGGAAATCTTAGGAAGAGATATCATGAACGTTATAGCGTGCGAAGGGCTCGAAAGAGTCGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAACACTAGGGCCGGGTTCAAACAAGTGCCATTAGACCAAGAACTGCTGAAGAATGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGCAGTGGATCAGGATGGAGCATGGATGTTACAAGGGTGGAAGGGACGGATCATCGACGGGTTGTCGTGTTGGGTAGTCGCGTAA 2061 44.78 MDNLLDDFPNSWNNFHYNPHLSNGFFNVNREIFDPLHHNSSSSSSSTSPSLSPSSTEGNSPDCHDTSNTMLKYITEMLMDEEEDLKTKPCMLIDCLALQAAEKSFYDVLGKKYPPSPIGLGDSTQNFRSDLGFFKAEDESESFNGDSSVFPPSDKPLLSQDSLFGMQYIFHFRQGAVEASKFLPVNGKFGTIDLDNDSSASVPSRAVDFSWLAAVGDARSTLQNGLFREKKNHQREDSDEELRSTKQSATFADDSSLSELFDELLLCRGESRQSPSWGSDGSSENESSKKSRKKTKGKKNRSRKQESCVEVVDLWTLLIQCAQAVSNYDQRTANELLNQIRHHSNPSGDGNQRLAYFFAKGLETRLAAGTPLYMPFASNETSAADILKTYQMFIKACPFRRMSYFYANRTILKLAENVTRLHIVDFGILYGLQWPCLIQRLSDRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVKYEDLNVNRDELTIVTCMFRMKNVPDETVVANSPRDKVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRYLCEREILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKNVEKIVNTEYHQDFAVDQDGAWMLQGWKGRIIDGLSCWVVA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3281533 3283593 + CmoCh01G006410.1 Cmo01g00641 374124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00641 686 MobiDBLite consensus disorder prediction 271 302 - -
Cmo01g00641 686 PANTHER SCARECROW-LIKE PROTEIN 30 37 684 - -
Cmo01g00641 686 MobiDBLite consensus disorder prediction 225 247 - -
Cmo01g00641 686 ProSiteProfiles GRAS family profile. 305 684 IPR005202 -
Cmo01g00641 686 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 684 IPR005202 -
Cmo01g00641 686 MobiDBLite consensus disorder prediction 38 66 - -
Cmo01g00641 686 Pfam GRAS domain family 316 683 IPR005202 -
Cmo01g00641 686 MobiDBLite consensus disorder prediction 225 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00641 Cmo-Chr1:3281533 Cmo01g01045 Cmo-Chr1:8241594 3.39E-68 dispersed
Cmo01g00641 Cmo-Chr1:3281533 Cmo13g00114 Cmo-Chr13:643198 0 wgd
Cmo01g00641 Cmo-Chr1:3281533 Cmo14g00135 Cmo-Chr14:586514 1.41E-14 wgd
Cmo01g00641 Cmo-Chr1:3281533 Cmo02g00793 Cmo-Chr2:4900767 0 wgd
Cmo01g00641 Cmo-Chr1:3281533 Cmo20g00427 Cmo-Chr20:2014095 1.00E-08 wgd
Cmo01g00641 Cmo-Chr1:3281533 Cmo06g00292 Cmo-Chr6:1456180 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9046 PF03514 GRAS 3.10E-114 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00641 - - bhj:120083055 1115.52