Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00655 ATGGCGGAGATTTGCTGTAAAGTGATAGGTGAGAGTGAGGCGTCGTCGTCCTGTGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTTGCCGGAGTTGCTCCGTCGGAGACTGATACTGTTGCGAAGCGACAGAAGCTGGAGGATCGATCGGCGTCGCTTTCCAGAGACTGTGATAACGCAGTTGAGAACTGTGATTCCGGGGAAGAAGAGACTGTCGGGAGTTTTGTGGCCGGAGAAGTTCCGAAGGAGGTGTCGACACCTCTGCATCGGGAATCTCCTATCATTCCTTTAGGCGTAGAGATTCCGAAGTTTGGATTCTCTTCTGTTTGTGGAAGACGGAGAGATATGGAAGACGCGGTGGCCGTTCATCCATCGCTTTGTTTTACAGACAAGGAAGCCACCGATAAGGTGCACTTGTTCGGTGTTTACGACGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGATCGACTGCACGAGCTCGTCAAAGAGGAGTTAGATCGGGAAGTGAAAGAAGAGTCTTCCGCCGCGGCGGAAGCCTCGAGGTGGGACGGCGCCATGAAGAGAATCTTCCGCCGAATGGACAACGAGGTTGTGGCGCGAAACAATGAAGAAATTGTGGTTGCGAATTGTAGATGCGAACTGCAGTCCCCGGACTGTGATGCCGTTGGATCCACCGCTGTCGTTGCAGTTGTGACGGCGAATAAGATCATCGTTGCTAACTGCGGCGATTCCAGAGCCGTTCTTTGTCGCAACGGGAAGGCCGTTCCTCTCTCCTCCGATCACAAGCCGGATCGGCCCGACGAGCTAAACCGGATCGAGGAAGCCGGCGGCCGTGTGATCTATTGGGACGGACCAAGAGTCCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGTAACAAACAAATCGCCGATAACTCACCGGTTTCTCGACCGGCGTTGACTTGTTGCGATAACTATCTGAAACCGTATGTGATATCGGAGCCGGAGGTGACGATAACAGATCGGACGGCAGAGGACGAGTGCCTAATTCTGGCGAGCGATGGGCTTTGGGATGTGGTTCCAAACGAGACGGCGTGCGGAGTTGCGAGCATGTGTCTTCGGGGAAAGACAGAGGCTCGGTCGCCAGGGTCGCCGCCTGTGGCGGTGGAGACGGCGGTGGAAAGGGTGGGGACGGAGAGGGCGGACAAGGCCTGCAACGATGCGTCGATACTGCTGACGAAGCTGGCGTTAGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTAG 1323 55.71 MAEICCKVIGESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETDTVAKRQKLEDRSASLSRDCDNAVENCDSGEEETVGSFVAGEVPKEVSTPLHRESPIIPLGVEIPKFGFSSVCGRRRDMEDAVAVHPSLCFTDKEATDKVHLFGVYDGHGCSHVAMRCKDRLHELVKEELDREVKEESSAAAEASRWDGAMKRIFRRMDNEVVARNNEEIVVANCRCELQSPDCDAVGSTAVVAVVTANKIIVANCGDSRAVLCRNGKAVPLSSDHKPDRPDELNRIEEAGGRVIYWDGPRVLGVLAMSRAIGNKQIADNSPVSRPALTCCDNYLKPYVISEPEVTITDRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEARSPGSPPVAVETAVERVGTERADKACNDASILLTKLALARHSTDNVSVVVVDLKRDT 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3349903 3352232 - CmoCh01G006550.1 Cmo01g00655 374138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00655 440 Gene3D - 107 440 IPR036457 -
Cmo01g00655 440 CDD PP2Cc 112 436 IPR001932 -
Cmo01g00655 440 ProSitePatterns PPM-type phosphatase domain signature. 148 156 IPR000222 GO:0043169
Cmo01g00655 440 Coils Coil 52 72 - -
Cmo01g00655 440 ProSiteProfiles PPM-type phosphatase domain profile. 112 436 IPR001932 -
Cmo01g00655 440 SUPERFAMILY PP2C-like 109 437 IPR036457 -
Cmo01g00655 440 PANTHER PROTEIN PHOSPHATASE 2C 37 46 439 - -
Cmo01g00655 440 PANTHER ALPHABET, ISOFORM E-RELATED 46 439 - -
Cmo01g00655 440 Pfam Protein phosphatase 2C 112 407 IPR001932 -
Cmo01g00655 440 SMART PP2C_4 95 434 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00655 Cmo-Chr1:3349903 Cmo15g00113 Cmo-Chr15:542388 1.91E-119 dispersed
Cmo16g00172 Cmo-Chr16:778718 Cmo01g00655 Cmo-Chr1:3349903 4.40E-56 dispersed
Cmo17g00734 Cmo-Chr17:7322476 Cmo01g00655 Cmo-Chr1:3349903 6.14E-18 dispersed
Cmo18g01222 Cmo-Chr18:12126621 Cmo01g00655 Cmo-Chr1:3349903 6.97E-56 dispersed
Cmo18g01223 Cmo-Chr18:12131759 Cmo01g00655 Cmo-Chr1:3349903 4.20E-28 dispersed
Cmo01g00655 Cmo-Chr1:3349903 Cmo10g00696 Cmo-Chr10:3188808 6.35E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00655 K14497 - csv:101206871 644.425