Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00687 ATGGCTAACGACGTCGTTTTGCCCTTCCCCTTCCCCTCTTCTCTTCTCCTCCTCATTTTCGCCTATTTGATTTGGTTTCATTTCCTCGCCCGTACGCTAACCGGTCCGAGAGTCTGGCCGGTCATAGGCAGCCTACCGGCTCTCATCTCGAATCGGCGGAGCCTCCATGACTGGATGGCTGGGAACCTCCGCTCCACAGGCGGCGCTGCCACATACCAAACTTGTACGGTGGCACTTCCATTCTTCGCTAGAAAACAAGGCTTCTACACGGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTCCGAACCCGGTTCGAAAATTACCCGAAAGGACCGGACTGGCAAGCGGCTTTTCACGATCTTTTGGGTCAAGGGATTTTCAACAGCGACGGCGAGATTTGGCTGGTCCAGCGGAAGACGGCGGCGCTGGAGTTCACGACGAGGACGCTACGGCAGGCGATGGACCGGTGGGTGAATCGCACGATAAGGACGCGACTTTGGTGCATATTGGATAAGGCGGCGGAGTATAAAACGGCGGTCGATTTGCAGGATTTGTTGCTCCGATTGACTTTCGATAACATTTGTGGGCTCACTTTTGGGAAAGATCCTCAAACTTTGTCGCCGGAATTGCCTGCAAGTCCCTTCGCTTTGGCGTTTGATTCCGCCACTGAAGCCACTCTTCACCGCCTTCTTTACCCTTGCATTTTATGGAGGTTAAAGAAGCTTCTGGGCATCGGAATGGAAAGAAGGTTAAAGGAGAGTTTGAAAGTAATAGAGGAATACATAAACGACGCCGTTGCATCCCGCAAAGAATCCCCCTCAGACGACTTATTATCCCGCTTCATGAAGAAGAAGCACGACGGCGACGGCGACGGCAACCGCTTCTCCGCTGCAGTGCTCCACCGCATCGCCTTAAACTTCGTCCTCGCCGGCCGGGACACATCCTCCGTGGCACTCACGTGGTTCTTTTGGCTCGTAATGAATCACCCGCATGTAGAGGCTAAAATCCTCGCCGAAATCTCAACGGTGCTCCGCCAGACACGTGGCGATGATCCACGCCGGTGGATCGAAGAGCCGTTGATGTTCGACGAGGCCGATAAATTGGTGTATTTAAAAGCCGCGCTGGCCGAAACGCTGCGTTTATACCCGTCCGTACCGCAGGATTTCAAATACGTCGTGGCTGATGACGTGTTGCCAGATGGGAGTTTTGTGCCGGCCGGTTCGACCGTGACGTATTCGATTTATTCGGCCGGGAGGATGAAGAGCATTTGGGGGGAGGATTGTGGGGAATTTAAACCGGACCGGTGGCTGTCGCCGGACGGGGACAGGTTCGAGGGGCCGAAAGATGGGTATAAATTCGTGGCGTTTAATGCTGGACCGAGAACTTGTTTGGGGAAGGATTTGGCTTATTTGCAAATGAAGTCCGTCGCCTCCGCCGTGCTCCTCCGGTACCAGCTGGCGCCGGTTCCCGGTCACCGGGTGGAACAAAAAATGTCTCTTACTCTTTTTATGAAGAATGGGCTTCGGGTTTATTTGCATCCTCGCCGGCTCGGCTAG 1560 54.29 MANDVVLPFPFPSSLLLLIFAYLIWFHFLARTLTGPRVWPVIGSLPALISNRRSLHDWMAGNLRSTGGAATYQTCTVALPFFARKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLVQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILDKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPASPFALAFDSATEATLHRLLYPCILWRLKKLLGIGMERRLKESLKVIEEYINDAVASRKESPSDDLLSRFMKKKHDGDGDGNRFSAAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEAKILAEISTVLRQTRGDDPRRWIEEPLMFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGSFVPAGSTVTYSIYSAGRMKSIWGEDCGEFKPDRWLSPDGDRFEGPKDGYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYQLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLG 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3503986 3506263 + CmoCh01G006870.1 Cmo01g00687 374170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00687 519 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PRINTS P450 superfamily signature 464 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 Pfam Cytochrome P450 90 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PANTHER CYTOCHROME P450 FAMILY-DEPENDENT FATTY ACID HYDROXYLASE 8 517 - -
Cmo01g00687 519 SUPERFAMILY Cytochrome P450 25 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Cmo01g00687 519 Gene3D Cytochrome P450 29 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo01g00687 519 PANTHER CYTOCHROME P450 8 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00687 Cmo-Chr1:3503986 Cmo17g00415 Cmo-Chr17:2771360 0 dispersed
Cmo01g00687 Cmo-Chr1:3503986 Cmo13g00069 Cmo-Chr13:416652 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00687 K15401 - csv:101214516 943.34