Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g00692 | ATGGCAGTTGGAGGGCTAGTGAATGCAACATGTGGGAATGTAACAGAGTTGATATTAGCAATGTTAGCATTACACCAAAACAAAATCCACATCTTGAAATTCTCCCTTTTGGGTTCCATTCTTTCCAATTTACTTCTAGTTCTTGGCACCTCTCTTCTCTTTGGAGGCTTATCCAATCTCAACAAGCAACAAACATTCAACCCAAAAGTCGCGAACGTAAGCTCTTTAGTGTTGCTACTCGGATTGCTATGCCAAATGCTGCCATTGATATCAAGATTTGCATCACCATCAGCTAAATTATGGACAGACATGTCTGTTCTAGAGCTATCAAGAACATGCAGCATCATAATGCTCATAGCTTATCTTGCTTATGTGTTCTTCCAATTGAAAACCCATAACCAATTTTTTGGTCTACCAGAGGAGGAAGAGGATGATGAAGAAATGGCAATAATTGGGGTTTGGAGCTCGTTTGGTTGGCTGGTGGGTATGACCATTGTCATAGCTGTTCTATCACAGTATGTTGTGGCTACAATTGAGGAGGCATCACAATCATGGGGCGTTTCGGTGAGCTTTATGAGTATAATTGTGCTGCCGATTATGGGATATAACACTTGGGATAGCATTGGGATCAGCAGCTCAAATTTCAGTGTGCCTTTGAGTGTAGCTGTTGGATGGTGTTCGAGCATCAAAATGGATCTTGATTTCGGTCTCATCGAAACTGCGTCTCTCGCCTTCGCCATCGTCCTCACTCTATTCACTCTACAAGTAACGTCCATCTAA | 780 | 42.18 | MAVGGLVNATCGNVTELILAMLALHQNKIHILKFSLLGSILSNLLLVLGTSLLFGGLSNLNKQQTFNPKVANVSSLVLLLGLLCQMLPLISRFASPSAKLWTDMSVLELSRTCSIIMLIAYLAYVFFQLKTHNQFFGLPEEEEDDEEMAIIGVWSSFGWLVGMTIVIAVLSQYVVATIEEASQSWGVSVSFMSIIVLPIMGYNTWDSIGISSSNFSVPLSVAVGWCSSIKMDLDFGLIETASLAFAIVLTLFTLQVTSI | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3536729 | 3539452 | - | CmoCh01G006920.1 | Cmo01g00692 | 374175 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g00692 | 259 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER | 2 | 255 | - | - | |
| Cmo01g00692 | 259 | Pfam | Sodium/calcium exchanger protein | 3 | 129 | IPR004837 | GO:0016021|GO:0055085 | |
| Cmo01g00692 | 259 | Gene3D | - | 1 | 142 | IPR044880 | - | |
| Cmo01g00692 | 259 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 2 | 255 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g00692 | Cmo-Chr1:3536729 | Cmo07g01105 | Cmo-Chr7:5785240 | 7.39E-74 | dispersed | |
| Cmo01g00692 | Cmo-Chr1:3536729 | Cmo06g00224 | Cmo-Chr6:1201700 | 1.86E-63 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g00692 | K07300 | - | csv:105436053 | 310.842 |