Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00706 ATGTCCGTCTCCGTCGCCGTTTCGAATTCGCCGGGGTTTTCCCCTTCGTCCTCGATGTTCTGCAACAAGGCGGCGATCATTTCTCCGGCGCCGGAAGCTCTAACACTGACGTTGGCTCATTTGAAGTCGTCTCAGCCTTCGTCGTCTTGCTCGTCTTCGCCGTCTTCCCCTTCTTCCCCTTTTTGGATTAGGTTTCCAAAGCCCCCTTCTGGGCTTTCCGCCGTGGCGCCAATGGCCTCCACTTCTTCTACTTCGTCTCCGACGTCGTCCAACTCGATCACGAAGAGGAAGAGACCAGCGAGGTTGGATATTCCGTTGACGCCGTTGAGCTTTGGAGCTCTGGCGTCGCCGTCGTCGTCGTTCGGGGACGTGATGGAGGCCGAGAGAGATGGGTATTCTGTTTATTGCAAGAGAGGGAGGCGGAGAATCTCCATGGAAGATCGGTATTCAGCCGCTGTTGATCTTCGTGGCGATTCTAAAGTGGCATTTTTTGGTGTATTTGATGGACATGGCGGTTCAAAGGCGGCAGAATTTGCAGCAAATAACTTAAAGAAGAACATAATGAACGAACTTGAAAGAATAGCTGACTATGAACAAGCCATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAAGATCAACGCGGTGGGTCATGTTGTGTAACAGCCCTGATCAAGAAAGGCAACCTTATTATCTCCAACGCCGGTGACTGCCGTGCCGTTCTTAGCAGCAAGGGCGTCGCAGAAGCCATAACCTCCGACCACCGCCCGTCTCGAGAAGACGAAAGACAGCGAATCGAGTCGAGGGGTGGATATGTTGATCTCTGCAATGGCGTTTGGAGAGTCCAAGGATCTCTAGCTGTAACAAGAGGGATTGGAGATGCTCACTTGAAACAATGGGTGATAGCAGAGCCAGAGACAACGTCGATACGGATCGAAGCTCGACACGAGTTCTTGATCTTAGCCTCCGACGGGTTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATCGTGCGCCCATTATGCGTGGGGATTGAGAAGGCAACGCCATTGGAGGCCTGTAAAAAGCTCGTGGAGCTATCACTTTCAAGAGGCTCAGTGGATGATATTAGTGTAGTTCTTATTCAATTGCCTAACTTCATTTGA 1158 51.04 MSVSVAVSNSPGFSPSSSMFCNKAAIISPAPEALTLTLAHLKSSQPSSSCSSSPSSPSSPFWIRFPKPPSGLSAVAPMASTSSTSSPTSSNSITKRKRPARLDIPLTPLSFGALASPSSSFGDVMEAERDGYSVYCKRGRRRISMEDRYSAAVDLRGDSKVAFFGVFDGHGGSKAAEFAANNLKKNIMNELERIADYEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLIISNAGDCRAVLSSKGVAEAITSDHRPSREDERQRIESRGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETTSIRIEARHEFLILASDGLWETVSNQEAVDIVRPLCVGIEKATPLEACKKLVELSLSRGSVDDISVVLIQLPNFI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3618988 3621231 + CmoCh01G007060.1 Cmo01g00706 374189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00706 385 MobiDBLite consensus disorder prediction 75 95 - -
Cmo01g00706 385 Pfam Protein phosphatase 2C 137 374 IPR001932 -
Cmo01g00706 385 SMART PP2C_4 122 379 IPR001932 -
Cmo01g00706 385 SMART PP2C_SIG_2 140 381 IPR001932 -
Cmo01g00706 385 CDD PP2Cc 131 381 IPR001932 -
Cmo01g00706 385 Coils Coil 180 200 - -
Cmo01g00706 385 Gene3D - 132 384 IPR036457 -
Cmo01g00706 385 ProSiteProfiles PPM-type phosphatase domain profile. 131 381 IPR001932 -
Cmo01g00706 385 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 384 - -
Cmo01g00706 385 MobiDBLite consensus disorder prediction 73 99 - -
Cmo01g00706 385 ProSitePatterns PPM-type phosphatase domain signature. 163 171 IPR000222 GO:0043169
Cmo01g00706 385 PANTHER PROTEIN PHOSPHATASE 2C 3 384 IPR015655 GO:0004722|GO:0006470
Cmo01g00706 385 SUPERFAMILY PP2C-like 131 383 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00706 Cmo-Chr1:3618988 Cmo04g00143 Cmo-Chr4:736275 5.06E-120 dispersed
Cmo04g01173 Cmo-Chr4:5993736 Cmo01g00706 Cmo-Chr1:3618988 1.13E-09 dispersed
Cmo13g00047 Cmo-Chr13:280901 Cmo01g00706 Cmo-Chr1:3618988 5.80E-140 transposed
Cmo15g00018 Cmo-Chr15:135022 Cmo01g00706 Cmo-Chr1:3618988 9.24E-82 transposed
Cmo01g00706 Cmo-Chr1:3618988 Cmo13g00046 Cmo-Chr13:280223 1.26E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00706 K17506 - csv:101207841 607.446